80857d043e3b55271cb91476386cd4c3 *CITATION
de7a7aed1b8321aa6636e25577aa2393 *DESCRIPTION
9de12d1faf0e186d8b0cd4fd885aee44 *INDEX
f019f44efd2e49c44d57f29c6e5bb2db *Meta/Rd.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
bf96cea99ce95dc28838af040ec96892 *Meta/hsearch.rds
9c48d3df0105f4813524311f08df93c4 *Meta/links.rds
2c5e4cfe6a12b69a8bfa102527ff018e *Meta/nsInfo.rds
3dc2f236a32d880d81c7b95fd61f05f8 *Meta/package.rds
97ff07deaf967a6686dbc780c182ce9c *Meta/vignette.rds
35a79ab38dbab6e7c79b676116a4aff8 *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/Ringo
73ed51b612463778928c60dbdef1b59f *R/Ringo.rdb
b9ec494e18cd973ff36baf69934b77a5 *R/Ringo.rdx
089e29bd75b0820e1f9801c950320f65 *agilentData/H3K4Me3_Tc1Liver_sol1_mmChr17_part.txt
5415524a104b5816a944f4971595d5ec *agilentData/arrayDescriptionAMEXP1029_part.txt
5a2434a37ee75088c3af5efcccc5240d *agilentData/mm9chr17.RData
c5eb37db0745300dbd8bb02ee3ff18e1 *agilentData/targets.txt
ac8b5e5600b8749e7c2f5bd1a84d616f *doc/Ringo.R
3839816a13a162c65bbab97c7a0986a5 *doc/Ringo.Rnw
d9bca0ec3bcaea6b2410f32ba6763538 *doc/Ringo.pdf
18fbaa454af6ec37d30f1798fedc3716 *doc/index.html
b8ad09fcb16b97300782f378c5505754 *exData/MOD_2003-12-05_SUZ12_1in2.ndf
93dcafa177f6105c8602c097f9b79b98 *exData/MOD_2003-12-05_SUZ12_1in2.pos
fe86e5c1cf343c486c4985a9e5a427b8 *exData/MOD_20551_PMT1_pair.txt
3f7ebd178b21eaf7d160d607a2e42ef4 *exData/MOD_20742_PMT1_pair.txt
8e164612155b94980a9cb3b9b7a148cb *exData/README.txt
f39530a6d35b8a18e8dd075205b37bd3 *exData/exampleProbeAnno.rda
b1f0e9e8dafc00780930776bfd6e9aa5 *exData/exampleX.rda
8455900bba7d71a31bbcffdbece9420e *exData/example_targets.txt
4bb3efa4b569917acddee6e3d9d5db33 *exData/reportersInexactMatchesHg18.rda
d020c2bea3ee4cc5de50e947df20e391 *exData/spottypes.txt
6ec1bba00f10d458b6a04793e3e9a231 *help/AnIndex
d0207be32a59660e02c2c33247a48c5c *help/Ringo.rdb
3613adf951eb7524882256a9308b8dd0 *help/Ringo.rdx
986f75cfdcb8565d8a154754bdd1c07a *help/aliases.rds
417477b15bfc807275f046482f882e87 *help/paths.rds
cab1ccf2c0fc30309a0d710b85ac664e *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
f6ea0d86647690b8d1e094ceab6cb12b *html/Ringo-internal.html
935666b36e11698b372a9a6e9bf0e488 *html/arrayImage.html
cd0e759fa7b775a743b4e98628c83fe4 *html/asExprSet.html
b0adeeb34ca20ed48e82e79fbce1d834 *html/autocorr.html
7cf1af5c76f993bc9ad0788e2f97bee3 *html/cherByThreshold.html
06c8885e7b0807097af2a973fc75ad9f *html/cherClass.html
8e0341e11006e3f4d1d28842f58a5b48 *html/chipAlongChrom.html
6f4c91f284d8a603f014dfc4b125d2ea *html/chipAlongChromOld.html
55507e45bf81c6e23c5a0a2ffee61b16 *html/computeRunningMedians.html
96a600180caed7024ab5eca697a61be6 *html/compute_gc.html
fa23446b924b1d362d6b6817e0b7b513 *html/compute_sliding_t.html
89a003f33f2f85610ebe0580976a3487 *html/corrPlot.html
cf37ed8e99d6d24baafbb7817998bcc8 *html/exportCherList.html
2d199c6388ef6c35f8e5e1903e2762f8 *html/extractProbeAnno.html
738da507bef284c2a4860435e53c81da *html/features2Probes.html
26b6152b1975704d4f14867214b46842 *html/findChersOnSmoothed.html
feab03850df846fdd4b837a2e70ed827 *html/ftr2xys.html
afd3c0584c31753da438394ae37adb18 *html/getFeats.html
f08650a4e2dfe2238f325206719704b2 *html/newCER.html
b127849840813cab2b6bf8dfd0a8c8dc *html/nimblegenNorm.html
35167094183e73b86f887693f7680a15 *html/nonzero.html
465373874a362c111fb1cb5c40ccd4ab *html/plotAutocorr.html
de76f7576b49cc436a27a920d2ff9cd7 *html/plotBM.html
cf99b2656c1199470152f49718571dff *html/plot_cher.html
07b0c78c55c91ba2da295240339b6d6d *html/posToProbeAnnoEnvironment.html
1b415ae2efd7dc48b0e4f076d66c13cd *html/preprocess.html
5f182656329cd7b2bfd269575051d414 *html/probeAnnoClass.html
7cce38ec7edc55aa2bd4747d18cdecf7 *html/qopS4.html
11cb8961b3bdc18698f4b76232c387bd *html/quantilesOverPositions.html
f2ad1c92e688f94a64fcf615e4234b23 *html/readNimblegen.html
3691e2d25637af005c071fcb6a5ae17d *html/regionoverlap.html
5e17e9d5441ffbfa644af66dd832b836 *html/relateCERs.html
b371482ccc8042bab5cd59f73899f273 *html/sigGOTable.html
8d673cfad42a903b761133a40b82c9b6 *html/sliding_meansd.html
c7cc53b074623d227d124862226c2d14 *html/sliding_quantile.html
533652886e0c10332383bf1db4c4e691 *html/twoGaussiansNull.html
7e692b45d25197d610b5bf3fc29e9714 *html/upperBoundNull.html
73ad1343ab180403c9def662c8175c7f *html/validProbeAnno.html
11983a0a0238ed5264ff834f2cfa2fdd *libs/i386/Ringo.dll
7f8b5e07b22635ba1d3829d5b32c86c3 *libs/x64/Ringo.dll
a4e348745bcee4d7022d2807ffd80359 *scripts/condenseBlatOutput.pl
26ace4b02da8e5d607f0566ccadc4e6a *scripts/condenseExonerateOutput.pl
ac0161dfde18540822564e99cdc6ae6f *scripts/condenseMUMmerOutput.pl
eebb5df013fcec9efeb3462c04cd9fb5 *scripts/convertSampleKeyTxt.R
abc83ca087b05944e99b736a18ec9cc0 *scripts/extractProbeSequenceFasta.pl
651d61b0dda52b6e924b69196870505d *scripts/graphChers2Transcripts.R
ed1c3d0e9bff0018ccf916c22a828c28 *scripts/makeProbeAnno.R
f69c0dd79ddeb4513eb72316c1a4b791 *scripts/mapReportersWithBiostrings.R
a97db632c7fe0facd9d1db343eeebc17 *scripts/retrieveGenomicFeatureAnnotation.R
