R: ModRNASequenceTrack

SequenceModRNAStringSetTrack-class {RNAmodR}

R Documentation

ModRNASequenceTrack

Description

A Gviz compatible SequenceTrack for showing modified RNA sequences.

Usage

ModRNASequenceTrack(sequence, chromosome, genome, name = "SequenceTrack", ...)

## S4 method for signature 'SequenceModRNAStringSetTrack'
seqnames(x)

## S4 method for signature 'SequenceModRNAStringSetTrack'
seqlevels(x)

Arguments

`sequence`	A `character` vector or `ModRNAString` object of length one. The sequence to display. See `SequenceTrack`.
`chromosome, genome, name, ...`	See `SequenceTrack`.
`x`	A `SequenceModRNAStringSetTrack` object.

Value

a SequenceModRNAStringSetTrack object

Slots

sequence: A ModRNAStringSet object

Examples

seq <- ModRNAStringSet(c(chr1 = paste0(alphabet(ModRNAString()),
                                       collapse = "")))
st <- ModRNASequenceTrack(seq)
Gviz::plotTracks(st, chromosome = "chr1",from = 1L, to = 20L)

[Package RNAmodR version 1.2.3 Index]