R: ModDNASequenceTrack

SequenceModDNAStringSetTrack-class {RNAmodR}

R Documentation

ModDNASequenceTrack

Description

A Gviz compatible SequenceTrack for showing modified DNA sequences.

Usage

ModDNASequenceTrack(sequence, chromosome, genome, name = "SequenceTrack", ...)

## S4 method for signature 'SequenceModDNAStringSetTrack'
seqnames(x)

## S4 method for signature 'SequenceModDNAStringSetTrack'
seqlevels(x)

Arguments

`sequence`	A `character` vector or `ModDNAString` object of length one. The sequence to display. See `SequenceTrack`.
`chromosome, genome, name, ...`	See `SequenceTrack`.
`x`	A `SequenceModDNAStringSetTrack` object.

Value

a SequenceModDNAStringSetTrack object

Slots

sequence: A ModDNAStringSet object

Examples

seq <- ModDNAStringSet(c(chr1 = paste0(alphabet(ModDNAString()),
                                       collapse = "")))
st <- ModDNASequenceTrack(seq)
Gviz::plotTracks(st, chromosome = "chr1",from = 1L, to = 20L)

[Package RNAmodR version 1.2.3 Index]