d899626bfdd384dd91c8b8199e8faa4f *CITATION
c544d2cd53cb8610b11e238bd968a391 *DESCRIPTION
1dbe7b0ff56e77e3512ff1a7ebb7c9a0 *INDEX
4eac6ab3aa1078cf95e81dc4f3b836f5 *Meta/Rd.rds
67aed9ddf4cfcdf16c4cb112b5f7dbab *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
476fcae17860f1e9304d5db55cbe47e7 *Meta/hsearch.rds
b52c74de288d4ee5e238971b275c2e2b *Meta/links.rds
132e5520024611696e059e81b219e72c *Meta/nsInfo.rds
0cc614f232b590e61bd16fa25ab30105 *Meta/package.rds
d8f7311fbbb92cfe6ccd97a34490ebea *Meta/vignette.rds
58c0afe02db9cfda1cef65bbe6f36f92 *NAMESPACE
200b15327638f2e7195e16f75e71a1b8 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/RCAS
0b588cb128502f2d6712f58cf890c355 *R/RCAS.rdb
b38e550cc5741f1b75582d250165c8ad *R/RCAS.rdx
de31c670955830cfd0b82e1e0ac37798 *data/Rdata.rdb
e821afda2cafe13957f6368badb579dd *data/Rdata.rds
c9a3fa5f0e48120b660470b78600c9a9 *data/Rdata.rdx
aa61ceef33ed2d9e60b6599aa703e650 *doc/RCAS.metaAnalysis.vignette.R
fe54a2d6bc82f877aea6d5309fd7b999 *doc/RCAS.metaAnalysis.vignette.Rmd
30fb21c97aaccb0c28b7c3ae5e1ec7df *doc/RCAS.metaAnalysis.vignette.html
40024b0f437bd42061ed9bccd2366166 *doc/RCAS.vignette.R
b11338cf28963b52692f3002695100fa *doc/RCAS.vignette.Rmd
49b497b6b557a3bcf2965e0645a0fc66 *doc/RCAS.vignette.html
247e560902e4d56eb3cc2fe9bec32180 *doc/index.html
4f8573e5f8b697319117c88327a4a236 *extdata/EIF4A3Sauliere20121a.bed
2779ca3ab60fcb8e560e86978c5aa1d2 *extdata/EIF4A3Sauliere20121b.bed
32aa8a32aa4b0b1b69dd340437d6e924 *extdata/FMR1_Ascano2012a_hg19.bed
d4d7442832f9b1d40ed3bb589326839a *extdata/FMR1_Ascano2012b_hg19.bed
5ae985d0d00b8dbc5c4e51481d2799b4 *extdata/FUS_Nakaya2013c_hg19.bed
53ec61cdf36a09a61f64ca31fdf0a0ae *extdata/FUS_Nakaya2013d_hg19.bed
2af4c54bf647b7e46dec40972101443e *extdata/hg19.RCASDB.sqlite
f0de64b19c59a7b202c8faff4d599ace *extdata/hg19.sample.gtf
99fb8d5b4e2fc1a11b4e92d5bd994d05 *extdata/hg19.sample.gtf.granges.rds
aa87ec9a0e15f7849d72747634b911ce *extdata/msigdb_test.gmt
8cea927d9a40a56fbdb778eae43f81e5 *extdata/testfile.bed
8cea927d9a40a56fbdb778eae43f81e5 *extdata/testfile2.bed
833910a2a991e1a7f208a0b24c53e887 *help/AnIndex
4f3c7cf589bbc934e50d6ad8605a7896 *help/RCAS.rdb
76d7338392dd56674e213544f5ea5e0d *help/RCAS.rdx
eba6cec166e3c89ffa8d2ce9214a5388 *help/aliases.rds
b2bc38b30af5d4c555eb62183ff81976 *help/paths.rds
9781c7348a5d4af4f402753a9e3185a6 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
f96470edf5e62083570fe9a5395a7675 *html/calculateCoverageProfile.html
92d8284c9e099870c1e6475c8c641b49 *html/calculateCoverageProfileFromTxdb.html
17b893d3ad8be66a51834849ea02d106 *html/calculateCoverageProfileList.html
463dfa23b8583d25ae1b5116c10fe73f *html/calculateCoverageProfileListFromTxdb.html
4970c2a7a9746037246c176765dcf9e3 *html/checkSeqDb.html
f0d1159ac82bb281f45fec9772a5c550 *html/createControlRegions.html
cc1a9a36dff7ecf4fceb681fcbffd974 *html/createDB.html
0045dac7aaad321dfd93b9c6cde17b30 *html/createOrthologousGeneSetList.html
445e0e9af30050f8ebbab999501efef4 *html/deleteSampleDataFromDB.html
15738050057488552a4a0f8df59dc3ad *html/discoverFeatureSpecificMotifs.html
7b7188e505dec7caaa514e26b6279d9d *html/extractSequences.html
7a76d9c05d171228bd293082eeda6e19 *html/findDifferentialMotifs.html
f93ae1f1645adce508768cec00026140 *html/findEnrichedFunctions.html
363f436fd63ac845edb243d03b16a54a *html/generateKmers.html
4dec1b6bb4c3dd640fd8cecbd0db3953 *html/getFeatureBoundaryCoverage.html
65cf2e3114bc187b9584650809d681c4 *html/getFeatureBoundaryCoverageBin.html
11908b0ea47ebdcbb78b772e87a2b345 *html/getFeatureBoundaryCoverageMulti.html
9d1753da3463832349b6ccc7fdaf8f4c *html/getIntervalOverlapMatrix.html
d4d80792e58fa474bdd8dfb2c989a3fa *html/getMotifSummaryTable.html
b5e2685a96af53e814fb58aac1dce5ff *html/getTargetedGenesTable.html
da062b96d4c9eeba0a352f564e7900e6 *html/getTxdbFeatures.html
8162d8c7ea571a87616a26a6671b434e *html/getTxdbFeaturesFromGRanges.html
3eebe1a62298262386722fa3dcc3ae30 *html/gff.html
b4015191e47dfa0d82996e2de0c05761 *html/importBed.html
7abc71f0ba41c9aa0e7aa34d32f87dff *html/importBedFiles.html
df82a754f8b8f1876708274ce88eb021 *html/importGtf.html
01c209362327d5b2568d9da1a0982e78 *html/parseMsigdb.html
280cc09cf1a4aa7e702dc5fc6564808f *html/plotFeatureBoundaryCoverage.html
2d3d71b9506b9c56001f9c02ab904052 *html/printMsigdbDataset.html
debf3fce203fead03f9428f6f5fc7acc *html/queryGff.html
44ff46f44dedd21f06405468511fc676 *html/queryRegions.html
4746bf1c60075f57af59bd4c0eaa47c9 *html/retrieveOrthologs.html
ec2da7440b45f62b02ab9ec43d51f56f *html/runGSEA.html
8af3ef6b2637c5cb4d07109c863aed92 *html/runMotifDiscovery.html
27d3190b6bbd3cd9834d2ed90d71e9d2 *html/runMotifRG.html
6aa3fa3ae86e11214930bf7f981797e7 *html/runReport.html
437b184b6210d364e319a6129be93513 *html/runReportMetaAnalysis.html
9ce618a560aeefa3b5e68de26cb24cb8 *html/runTopGO.html
92150d4c2fc97f00c3be275956cfa52f *html/summarizeDatabaseContent.html
052962104b7e8e51b9215772678183cd *html/summarizeQueryRegions.html
8f2bdbd7199dc9a12639fd9d41065b8a *html/summarizeQueryRegionsMulti.html
053cf68e09070e277a798b0736fb7874 *reporting_scripts/footer.html
b1442cb874099cb5af45301431024ee0 *reporting_scripts/header.html
6f6f4a2838b6caa7b0590b14c4b7aa03 *reporting_scripts/report.Rmd
a09a306dbdd05abf6f6f854d2cb58f14 *reporting_scripts/reportMetaAnalysis.Rmd
