R: Plot interaction on a genomic track

plotTrack-methods {R3CPET}

R Documentation

Plot interaction on a genomic track

Description

This helper method can be used to display a genomic track for a certain location that contains the chromosome and the related interactions if any.

Usage

## S4 method for signature 'ChiapetExperimentData,GRanges'
plotTrack(object, range)

Arguments

`object`	a `ChiapetExperimentData` object which contains the raw data.
`range`	The genomic coordinates of the location to display

Value

a ggbio::track object

Author(s)

Mohamed Nadhir Djekidel (nde12@mails.tsinghua.edu.cn)

Examples


    petFile <- file.path(system.file("example",package="R3CPET"),"HepG2_interactions.txt")  
    tfbsFile <- file.path(system.file("example",package="R3CPET"),"HepG2_TF.txt.gz")  

    ## Not run: 
    x <- ChiapetExperimentData(pet = petFile, tfbs=  tfbsFile, IsBed = FALSE, ppiType="HPRD", filter= TRUE) 
    gr <- GRanges("chr1",IRanges(start=100000,end=300000))
    plotTrack(x,gr)

## End(Not run)

[Package R3CPET version 1.20.0 Index]