HLDAResult-class {R3CPET}R Documentation

Class "HLDAResult"

Description

This class is a container for the results generated by the HLDA algorithm

Usage

 HLDAResult(docPerTopic,wordsPerTopic ,betas)

Arguments

docPerTopic

Object of class "matrix" describing the partnership of each document in a topic. In our case a documents is the protein interaction networks associated with each DNA interaction and the topics are the inferred chromatin maintainer networks.

wordsPerTopic

Object of class "matrix" describing the partnership of each word to a topic. In our case a word is an edge and the topics are the chromatin maintainer networks.

betas

Object of class "numeric" the beta values for each network. Basically, it shows how popular is the network.

Value

an HLDAResult object.

Accessors

For a given HLDAResult object the following accesor functions can be used:

docPerTopic(x)

gets the content of the docPerTopic matrix.

wordsPerTopic(x)

gets the content of the wordsPerTopic matrix.

betas(x)

gets the betas values.

Author(s)

Mohamed Nadhir Djekidel (nde12@mails.tsinghua.edu.cn)

References

Chong Wang, John Paisley and David M. Blei, Online variational inference for the hierarchical Dirichlet process .In AISTATS 2011

Mohamed Nadhir D, Yang C et al, 3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process, ....

See Also

NetworkCollection, ChromMaintainers , InferNetworks

Examples

showClass("HLDAResult")
[Package R3CPET version 1.20.0 Index]