QuasR-package           Quantify and Annotate Short Reads in R
alignmentStats          Get statistics on alignments
preprocessReads         Preprocess Short Reads
qAlign                  Align reads
qCount                  Quantify alignments
qExportWig              QuasR wig file export
qMeth                   Quantify DNA methylation
qProfile                Quantify alignments by relative position
qProject-class          qProject objects
qProjectUpdate          Update qProject
qQCReport               QuasR Quality Control Report
