84e60024b80dbe4fdd18cf20efd1a6a3 *CITATION
0162e13fe141e8d22cc9dfd89895fd74 *DESCRIPTION
2e28c59f534352460308db525f1309a8 *INDEX
727a23ecec9f1a73a2b36bd7c1bc6fb1 *Meta/Rd.rds
f51f28e08b4fc215e2f6955f2c2ae531 *Meta/features.rds
09cbd9cdf731e4fb4b3c5fbdfedf3b91 *Meta/hsearch.rds
69ed90da06d6c96766aeec607954bc3a *Meta/links.rds
e4f1d9ccd11db56b352b62bbbc5a69b4 *Meta/nsInfo.rds
35f985f1a77a5d086e2db82d3cfe3bc5 *Meta/package.rds
a8192af3bfc8a41b169fab72f6e57ede *Meta/vignette.rds
152943118ed5cb91841089afe1fa88a0 *NAMESPACE
e57f59556f85613172e597d16f9d0479 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/PGA
78cac6153f05e3f86771b66669155ccf *R/PGA.rdb
e47e362fb5b671e15f0ecb6d5d5e42b1 *R/PGA.rdx
da744d2fd1ce9ea8082ead76055bd1ee *doc/PGA.R
8fe205eac3dc953585f2beca1bc4a2d2 *doc/PGA.Rnw
8ac7705eb37ca19a30dd284b0b9ab4d4 *doc/PGA.bib
0d3bac787dde89701809f1b1742c4f57 *doc/PGA.pdf
c946a4e9edacdc559c6b907704244b98 *doc/index.html
d2d3001867978814dbb4f00d42de4619 *extdata/annotation/exon_anno.RData
9dada94eeb9674f03ed9b635c52cba72 *extdata/annotation/ids.RData
db7bedb40cc3d176b8adcb26cd2b7dc4 *extdata/annotation/procodingseq.RData
d1736ea15c31f160d149ed72a3e0baed *extdata/annotation/proseq.RData
b628aedf208c94ce986553216beb0e64 *extdata/annotation/splicemax.RData
90e65f32186a16153d5eec36bec09147 *extdata/annotation/txdb.sqlite
573459978f57f4b27cf015f8c1e0c987 *extdata/fusion/star-fusion_example_input.tsv
3aafce959a5cf5cdf207215ec236bbe2 *extdata/input/PGA.vcf
51fc19ac042cc844740c53b8d9cdf5ec *extdata/input/Trinity.fasta
671180bb64135edd17d9aa1e9e943063 *extdata/input/junctions.bed
9dff2ad9f7ff0e0eb8e05242ad5d8950 *extdata/input/mascot.dat
a9121d2732844083edb4558ab53cfb1d *extdata/input/msgfplus.mzid
1268f9781323037abfb7413176f8d76d *extdata/input/pga.mgf
8552639adf7bd23addfbb4dab285c0cd *extdata/input/transcripts.gtf
31035d33dde2f7183e5602e37e33bf80 *help/AnIndex
3d0dc91b440eaba086fbb193d1fdde47 *help/PGA.rdb
f435c9940f6ea766b6836f9864c6d4f7 *help/PGA.rdx
467668cf2ae1e6e49785c71b44638397 *help/aliases.rds
a4ebe8f1bcc9ba2454c3f0cefe04e72f *help/paths.rds
ea617d0a5a991b182f447475826a2c8f *html/00Index.html
86173c19a1fe0b3eaf527f0cffb182d2 *html/PrepareAnnotationEnsembl2.html
856e729b5e128d3b6aaa0d9efc8f1a1b *html/PrepareAnnotationRefseq2.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
82faeb786af68bce52649925a6d9b5a7 *html/addGeneName4Ensembl.html
172c423775c0026a227d08d42c0a52eb *html/buildFusionProteinDB.html
7426b841ae6c011b7d3988c8d8c90e8e *html/createProDB4DenovoRNASeq.html
12eae817dd90eb1cdd4593f96a0f678a *html/dbCreator.html
0b2c7596cf856052e0240b91bdf8e98b *html/easyRun.html
68e1585d8a194678c2c8f3ba9a066370 *html/parserGear.html
d180ce978e3b7b1dba90700ad17a2349 *html/reportGear.html
9f4569d604c34cb07cb61c422967e6e3 *html/runTandem.html
912baa3efd6bd570df218f6072007c34 *parser4PGA.jar
720b2a86b21fa0eacbaf1abdbdf455ec *unitTests/test_check_parser.R
