c7029816d4476857bf5db8196bd37db9 *DESCRIPTION
0d7d43da21bd608b62293cb8cec2beae *INDEX
309bee6a87866232605a26bcc7542673 *Meta/Rd.rds
d3c44f162391f4205a5131aad47a39b4 *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
39d3bf027586c39fe278278bd74809ef *Meta/hsearch.rds
22d5f259e561e93d708d19bc77333131 *Meta/links.rds
c157d1798e693ab80f24ac5aa03f4541 *Meta/nsInfo.rds
af98df0b0bdc0aacf855edf79a596d3f *Meta/package.rds
06ab9e69708eafdc9a6d1abe2184e9be *Meta/vignette.rds
cdcb42b04205359c7a4e7c9b1b1aa622 *NAMESPACE
64850b61b619186ba39a356d074c88f6 *NEWS
e1f4dde66e67d1b13d90354b38dcbefd *NEWS.Rd
ebf0fc819595d631b8bf280c4b049940 *R/MinimumDistance
94aec5d9e93ef52414babed89bed65dd *R/MinimumDistance.rdb
19d2a85f7f749d9d2f2267588212f3e9 *R/MinimumDistance.rdx
0e57e8c0ac03566174a91534cd0fff56 *data/md_exp.rda
d1eb803d6c58ff8f8174f739ad7a3699 *data/md_gr.rda
8a3e3917ec140296abace15fe80a7154 *data/trioSetListExample.rda
0163422786483a5396045cd6ddf930f2 *doc/MinimumDistance.R
f81c1183bb9c95f3c3fd1f34b314d679 *doc/MinimumDistance.Rnw
ff789c7439b283f113452749653cfa6b *doc/MinimumDistance.pdf
495dce7ecfea26efbcd55f37b50ad9b3 *doc/index.html
e03ea25b8db06926dae3d1aafebd9c33 *extdata/F.txt
efc08f8a945c313599533f15913a337c *extdata/M.txt
95db2e3447bae89e33de8a32f7c27b22 *extdata/O.txt
85bbbd3aa787fd480ae50bb2ffcd8090 *extdata/O1.txt
54e6869d2875b8cd3642e6d6fc185860 *extdata/baf.rda
ffd852d6ef47afc2784d7424175a813b *extdata/exampleFiles.R
002e045dee6803f685d493dcf6940913 *extdata/logRratio.rda
1f4fa7c977cf5e93d1c7a01856de7339 *extdata/md_granges.rds
52ee010584bb394d03f0a8eea59b735a *extdata/mdgr.rds
af6d332ea2ddb50e64beefa03b484777 *extdata/pedigreeInfo.rda
8bb642a23b584fcbaf5fb2f7b7e1bd01 *extdata/pennCNV_MendelianProb.rda
52c879d772258c1e361cf27fc7aeff24 *extdata/sample.sheet.rda
26714615fc7a01e7c93b8d8035ea3f27 *extdata/trioSet12023chr12.rda
25b53aab37b8c902341b54cc3edf8ef6 *help/AnIndex
607204bfb793aaca7ad72658bd9723f4 *help/MinimumDistance.rdb
f0ff244839fc5f518df3458507224ac2 *help/MinimumDistance.rdx
9dc059b0ffce06899b45b6713315c55a *help/aliases.rds
a8a31f5ab5b7b4ef33a2943f9162858c *help/paths.rds
066a5bb83a1eef2daf2e9096aec68e2f *html/00Index.html
1c462cf5835528e0632a64c00a21d0f5 *html/DNAcopyParam.html
5b7112a0beace249264166c39dedca66 *html/Defunct.html
07550dd4a8d8d157e19d548e99f4355e *html/Deprecated.html
aef50f81e6f2b95d2ff90a0b8d864aba *html/FilterParamMD-class.html
84e6b9bb577973c182f677cccff2fa2e *html/FilterParamMD.html
3e687a601009a30d7eb6db67f79033d4 *html/MAP.html
2d02bea97b6ef196e328713749a9880f *html/MAP2.html
72a15d4fa9fefdc40d255a13a9b1d1cb *html/MDRanges-class.html
46122722f27982b345ce575dd7f78799 *html/MinDistExperiment-class.html
ce5525032c0a000b8232509d0aa86510 *html/MinDistExperiment.html
4c6297277de5fdd6407689f279fb4628 *html/MinDistGRanges-class.html
e8426f349cfb8e3ed373c50869555bdc *html/MinDistGRanges.html
6b07f4a0b8699c7805e297143ecfe074 *html/MinDistParam-class.html
553b96367a61260fc6226205580d930f *html/MinDistParam.html
8dacebb97c3f121efd8a0ce9b5b22231 *html/MinDistPosterior-class.html
b5706ca026fb41577ccfa6836ede3efa *html/MinimumDistance.html
5994f2cf39bbdaebffb494fa740dfc77 *html/ParentOffspring-class.html
32bc0e0ca679a601f038af6c0dd2b79d *html/ParentOffspringList-class.html
f3286c5f200661efffc15c5c55db9a7d *html/Pedigree-class.html
170ea88a843e04bd811847603238af17 *html/Pedigree.html
d1e6785b1b1fd98ff726e482097779b1 *html/PennParam.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
91f70f2626ca518073685e5607c7c2a7 *html/TrioSet-class.html
c6169ae0265dc541ff9d06918ae23da2 *html/TrioSet.html
38324c0f1d61b40834ead289ab84aff5 *html/TrioSetList-class.html
574f004477b2c4c4c7c6fdfdc43dd256 *html/TrioSetList.html
cf981e5d5d0ed6abc3e64c6e6d51688e *html/TrioSetListLD.html
38bdb672e82655e047e6f32af42c6619 *html/acf2.html
8731d13f79eee051183a3318bccabb7b *html/calculateMindist.html
d2de5091e860044bd30a39ca5b6090bf *html/coercion-methods.html
72a9793d6dc0936fe5be171ae7dea837 *html/denovo.html
ae502d987ff134882c6e5fdf4a66645a *html/exampleTrioSetList.html
22af7ca3a1c6e7f200cd0508322cb51a *html/filterExperiment.html
c0b8e516efed4cf4a4a1c13cf329a70a *html/mad2.html
c78dada684f7f6d8aa307cc2f906c01b *html/mdLegend.html
e48954427bc3e15f9d12073afb1c9922 *html/md_exp.html
6e42e77a2900fae79843d7dbcaf3d9f8 *html/md_gr.html
539599c4733ff3e3aaae7eb9d6fe9769 *html/mindist.html
355fc716fa64df5f6fcef5783f449390 *html/nMAD.html
5b2583587f0d212ff83b21355c999dd9 *html/pedigreeGrid.html
6efd900fc33b4f8a781eff849be3be7f *html/pedigreeName.html
835ef04c44d85b185852da4b23fc0fa9 *html/pedigreeViewports.html
6fad6d61d7cd2e6c2ecca8b67e676d4d *html/plotDenovo.html
b0a4139d2c2b9b32e8547788e11f5528 *html/range-ILimit-method.html
9d9cceff79fe224a1ef5cfba326b9ddd *html/segment2.html
8b1703686f0ca0a0e7b3e9e9ff381eaa *scripts/Affy2.R
15ff3c916756840de8888648ce5db0ed *scripts/Discordance.Rnw
de1aeda81e8c8ab6ded25df5ae2dbfab *scripts/Sweave.sty
a099ccea8ee43f05d160bcd257bb7afd *scripts/affy.R
3f33c8b63c426893a035c8f308a28ff5 *scripts/cleft_notParallel.Rnw
7e24f8634a31c17e346eb2286684ad37 *scripts/logR.baf.rda
ba7dfa59e03a85041de313b351b0f3c7 *scripts/runDiscordance.R
e1af4b14d6f30a4e4e0d1c044f671c51 *unitTests/Makefile
68b329da9893e34099c7d8ad5cb9c940 *unitTests/test_FilterParam.R
77e62a5014e356ab9d18448b2c0b384d *unitTests/test_MinDistExperiment.R
f1475ea1d62c4ffd452d99f92cd8350b *unitTests/test_Pedigree-class.R
781a05f56baa5e0dd8ec83790c5df78a *unitTests/test_PedigreeViews.R
77dfc64a92be3f977d0c916f43b20229 *unitTests/test_SnpArrayExperiment.R
e06a2b41fe11be4b705479117744ee1f *unitTests/test_TrioSetList.R
dc3c4b8f7bb58771e718df5fdc795973 *unitTests/test_calculateMindist.R
4540f66b68b46c13b9b426fe03cd204e *unitTests/test_callDenovoSegments.R
4587128861c0c33e9b8214229b5235a2 *unitTests/test_few_markers.R
c3e51589426259ed53a1a0441688468b *unitTests/test_posteriorCalls.R
f5434d8f5bb250791776114ce8fdb246 *unitTests/test_quads.R
68b329da9893e34099c7d8ad5cb9c940 *unitTests/test_rdsViews.R
2d2179773cc4e441499d731ccba69f3c *unitTests/test_splitsForCBS.R
