R: get the mean and median of specific feature.

get_mean_median {MicrobiotaProcess}

R Documentation

get the mean and median of specific feature.

Description

get the mean and median of specific feature.

Usage

get_mean_median(datameta, feature, subclass)

Arguments

`datameta`	data.frame, nrow sample * ncol feature + factor.
`feature`	character vector, the feature contained in datameta.
`subclass`	character, factor name.

Value

featureMeanMedian object, contained the abundance of feature, and the mean and median of feature by subclass.

Author(s)

Shuangbin Xu

Examples

data(hmp_aerobiosis_small)
head(sampleda)
featureda <- merge(featureda, sampleda, by=0)
rownames(featureda) <- as.vector(featureda$Row.names)
featureda$Row.names <- NULL
feameamed <- get_mean_median(datameta=featureda, 
                    feature="p__Actinobacteria", 
                    subclass="body_site")
#not run in example
#fplot <- ggdifftaxbar(feameamed, featurename="p__Actinobacteria", 
#                     classgroup="oxygen_availability", subclass="body_site")

[Package MicrobiotaProcess version 1.0.5 Index]