MADSEQ-package          Mosaic Aneuploidy Detection using Massive
                        Parallel Sequencing Data (MADSEQ)
MadSeq-class            The MadSeq class
aneuploidy_chr18        An S4 class MadSeq object
deltaBIC                Accessing delta BIC of MadSeq object
normalizeCoverage       correct coverage bias due to GC content
plotFraction            histgram for the fraction of aneuploid cells
                        estimated by MadSeq model
plotMadSeq              density plot for posterior distribution of
                        selected model
plotMixture             density plot for the posterior distribution of
                        alternative allele frequency estimated from the
                        selected model
posterior               Accessing posterior distribution of MadSeq
                        object
prepareCoverageGC       get sequencing coverage and GC content for
                        targeted regions
prepareHetero           prepare heterozygous sites for aneuploidy
                        detection
runMadSeq               Model to detect and quantify mosaic aneuploidy
summary,MadSeq-method   Summarize statistics of the MadSeq object
