DBI to construct LRBase-related package

[Up] [Top]

Documentation for package ‘LRBaseDbi’ version 1.6.0

Help Pages

class:LRBaseDb LRBaseDb objects
columns A function to return the columns of LRBase that user can retrieve
columns-method A function to return the columns of LRBase that user can retrieve
dbconn A function to return the connection to sqlite3 file
dbconn-method A function to return the connection to sqlite3 file
dbfile A function to return the directory that the sqlite3 file stored
dbfile-method A function to return the directory that the sqlite3 file stored
dbInfo A function to return the database information
dbInfo-method A function to return the database information
dbschema A function to return the schema of sqlite-database
dbschema-method A function to return the schema of sqlite-database
FANTOM5 Data to construct user's original LRBaseDb package
generic,columns A function to return the columns of LRBase that user can retrieve
generic,dbconn A function to return the connection to sqlite3 file
generic,dbfile A function to return the directory that the sqlite3 file stored
generic,dbInfo A function to return the database information
generic,dbschema A function to return the schema of sqlite-database
generic,keys A function defined by AnnotationDbi to return the keys
generic,keytypes A function to return the columns that user can specified in select function
generic,lrListDatabases A function to return the list of databases used in the package
generic,lrNomenclature A function to return the scientific name
generic,lrPackageName A function to return the package name
generic,lrVersion A function to return the LRBase version of package
generic,select select function defined by AnnotationDbi-class
generic,species A function to return the name of organism
keys A function defined by AnnotationDbi to return the keys
keys-method A function defined by AnnotationDbi to return the keys
keytypes A function to return the columns that user can specified in select function
keytypes-method A function to return the columns that user can specified in select function
LRBaseDb LRBaseDb objects
LRBaseDb-class LRBaseDb objects
lrListDatabases A function to return the list of databases used in the package
lrListDatabases-method A function to return the list of databases used in the package
lrNomenclature A function to return the scientific name
lrNomenclature-method A function to return the scientific name
lrPackageName A function to return the package name
lrPackageName-method A function to return the package name
lrVersion A function to return the LRBase version of package
lrVersion-method A function to return the LRBase version of package
makeLRBasePackage Making LRBaseDb packages from corresponding table as single data frame.
metaFANTOM5 Metadata to construct user's original LRBaseDb package
select select function defined by AnnotationDbi-class
select-method select function defined by AnnotationDbi-class
species A function to return the name of organism
species-method A function to return the name of organism