a922f2544b436d4baea5537dd3cd5354 *CITATION
17a619db89d622f1ae6121afae99aa52 *DESCRIPTION
e5ab8fc36593747faeecbb1631bab616 *INDEX
6da90d0aa53b3f04ee00040851dcb47c *Meta/Rd.rds
047684693516c6240c9f13e09d235fc0 *Meta/data.rds
f51f28e08b4fc215e2f6955f2c2ae531 *Meta/features.rds
0dc3c2ea28e520ab363e6b863b4d5b99 *Meta/hsearch.rds
51440ead25f4f74924871b96a5e1d4d8 *Meta/links.rds
d7f7d73f48873e2661dec52f12424560 *Meta/nsInfo.rds
b46c8ecf8752ffe10dda8704db33d20a *Meta/package.rds
f29f0b836c2dcf6810ce8f5476db888a *Meta/vignette.rds
861641a6de00d3a8bcf1b6ddae8b28a1 *NAMESPACE
b47dc3f400bda80ac57cb368c8423ff4 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/LOLA
f2291e08e690a322369886a8afb0b6ba *R/LOLA.rdb
c49eebcd49e10e445323efe075cf9e72 *R/LOLA.rdx
0defdf6d57daf84628f1f4746e5c433e *data/sample_input.RData
4143de810969370e9d4dde813314c121 *data/sample_universe.RData
0b475857d7657740c39b6f4fb18c1fd7 *doc/choosingUniverse.R
ab8ecf837ac883c0c5587e2143707970 *doc/choosingUniverse.Rmd
48c63dc5d0b71c72f57c35fb29522317 *doc/choosingUniverse.html
425efde37a16c5b3031cf5b94d3fefb2 *doc/gettingStarted.R
f203a26bdd7139fe5360f13486af09d9 *doc/gettingStarted.Rmd
d6396915dc0084ef8ab9cdd707677f18 *doc/gettingStarted.html
85222a6636e14ddad8fb7579293991a2 *doc/index.html
574c333d042dd6a52b0c3dba8dffa4ca *doc/usingLOLACore.R
09247d5a0ee802b06a452dd4a2d9f05e *doc/usingLOLACore.Rmd
2d6f3c2acb5c78c6f530a893fb4a148f *doc/usingLOLACore.html
8a0e9d873cc0409b0ca4e83103a458e4 *extdata/examples/combined_regions.bed
0abeb2e38c96db3c248da710a90ad5c4 *extdata/hg19/ucsc_example/collection.txt
d27f1ef73a44abc577b95ac8b7858098 *extdata/hg19/ucsc_example/index.txt
2efe7d09742fbd7d5668dcd0c8d15db3 *extdata/hg19/ucsc_example/regions/cpgIslandExt.bed
c91cf10ca317235a54ff5f26c2ddb51c *extdata/hg19/ucsc_example/regions/laminB1Lads.bed
77a3e268a8d6bf32613d5cfd46328eef *extdata/hg19/ucsc_example/regions/numtSAssembled.bed
b81ae934b502bda2ec59f31be5ee7675 *extdata/hg19/ucsc_example/regions/vistaEnhancers.bed
0d6aacd8d87eea2c5b1ccfc09971d561 *extdata/hg19/ucsc_example/regions/vistaEnhancers_colNames.bed
59cd3432078d90b537ef01021a9de7af *extdata/hg19/ucsc_example/sizes.txt
0abeb2e38c96db3c248da710a90ad5c4 *extdata/multi/collection1/collection.txt
d27f1ef73a44abc577b95ac8b7858098 *extdata/multi/collection1/index.txt
ec6fce6a86d27a7b09ceed833ce4b556 *extdata/multi/collection1/regions/cpgIslandExt.bed
a97b82aa363c1e9480170298f7fa3cbe *extdata/multi/collection1/regions/laminB1Lads.bed
01d9b39aebef8ea39e627474374c0d85 *extdata/multi/collection1/regions/vistaEnhancers.bed
2a6cddabb1aac76451c69a354f0b249f *extdata/multi/collection1/sizes.txt
d27f1ef73a44abc577b95ac8b7858098 *extdata/multi/collection2/index.txt
ec6fce6a86d27a7b09ceed833ce4b556 *extdata/multi/collection2/regions/cpgIslandExt.bed
a97b82aa363c1e9480170298f7fa3cbe *extdata/multi/collection2/regions/laminB1Lads.bed
01d9b39aebef8ea39e627474374c0d85 *extdata/multi/collection2/regions/vistaEnhancers.bed
2a6cddabb1aac76451c69a354f0b249f *extdata/multi/collection2/sizes.txt
7a50a0724c3eb5aba1fdbd843cbdb76c *help/AnIndex
e13ddd59f32a303cc7dafe4ae65f6892 *help/LOLA.rdb
c24c5e2d976bad8be2f25f5ba3402e74 *help/LOLA.rdx
612729e2c487165f68e8d4899cd9af10 *help/aliases.rds
20a305651e32492e86a8a690fd28e1e4 *help/figures/LOLA-logo.png
f38600699f97b4efe3d1ad4546fc5311 *help/paths.rds
4d7d54a65b73d23139715b5beb95d797 *html/00Index.html
f98567942ba06d5440a25ef5e318d897 *html/LOLA.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
c5b4d335488cd40b03f33cb303ec9b9f *html/buildRestrictedUniverse.html
b023c2e4bed7abb1b285432d3f5bba1b *html/checkUniverseAppropriateness.html
760432167c115baba3431c681d5f6f03 *html/cleanws.html
e6b531e9d04c55f4c1b2d88b64d281c1 *html/countOverlapsAnyRev.html
865529475704e17602b2637c13070b06 *html/extractEnrichmentOverlaps.html
c6559a3a3e88577453b0146a61881ab8 *html/getRegionFile.html
89a428099517014fb1b3bac87e146d19 *html/getRegionSet.html
2c0caa6e35f49656f676fae9c5d7307d *html/lapplyAlias.html
2d394ead4aeb14581cffbb8fb577c200 *html/listRegionSets.html
b321bde5516341b059f38d0ef2db8f72 *html/listToGRangesList.html
02e0e8229d2001b3543edd9dd4399ea4 *html/loadRegionDB.html
083ceaf8b0d93b86492abdc7087428bf *html/mergeRegionDBs.html
0cdf882169ad8621218c0bdf1647b94a *html/nlist.html
b151dc4fea58d61621be4784dcb203f7 *html/plotTopLOLAEnrichments.html
53593a47b511fabd02c0ef16db0589f6 *html/readBed.html
3b093ff32b2ed287840c3bd761a8526d *html/readCollection.html
ae8224b9c2cef4a33b1934243e84e2b5 *html/readCollectionAnnotation.html
48774ecada91c75b7e98ea78f8432018 *html/readCollectionFiles.html
894403a2a9a4141c34fb324682c73a2b *html/readRegionGRL.html
5bcc6cd26338caf0bf578988a0b1e383 *html/readRegionSetAnnotation.html
d95ed68fea6b7e6001513505e620df55 *html/redefineUserSets.html
36b11292284622889701fbdf0e26e5a7 *html/replaceFileExtension.html
b2eeb021ff156a8661c5f4fede933a97 *html/runLOLA.html
b5efca2706e61f84ae46814f23c5d96c *html/sampleGRL.html
90baf7e29f73512513a75ef0cdf88bb0 *html/setLapplyAlias.html
e1147ad446bd24ce5b35a91b0ac53b43 *html/setSharedDataDir.html
e1d38039cf89dc400b8d953d42fc36b1 *html/splitDataTable.html
fd5354341f2f0050f7e17aa5c6684121 *html/splitFileIntoCollection.html
83e52b36a1b5d5a2a8cc924fcc5e0b57 *html/userSets.html
bd76b79f420da381940cb9117a1d43ee *html/userUniverse.html
ff205ed2e0cad8617ed7e0f4977ff692 *html/write.tsv.html
c76eccdb32c2ec40374edae94cda44b2 *html/writeCombinedEnrichment.html
5adc9c360720957ff3b0bace0a886129 *html/writeDataTableSplitByColumn.html
6662a2735721f99529114c9c0c1a95e4 *scripts/LOLA
2197004cbfb72f0b77fb1fafec0c6bdd *web/index.html
9d6c306930e625fdd0c9fd13c2c7ffdb *web/webComponents/ajax-loader.gif
592477d76c8e6a9898b729f9608becd2 *web/webComponents/d3.min.js
d307496efe5fbac7d5164c5ef8536971 *web/webComponents/gridstyle.css
