R: Construct representative Exons

ExonsCluster {IMAS}

R Documentation

Construct representative Exons

Description

This function constructs representative Exons.

Usage


    ExonsCluster(ASdb,GTFdb,Ncor=1,txTable=NULL)

Arguments

`ASdb`	An ASdb object containing "SplicingModel" from the `Splicingfinder` funtion.
`GTFdb`	A TxDb object in the GenomicFeatures package.
`Ncor`	The number of cores for multi-threads function.
`txTable`	The matrix of transcripts including transcript IDs, Ensembl gene names, Ensembl transcript names, transcript start sites, and transcript end sites.

Value

ASdb containing representative exons.

Author(s)

Seonggyun Han, Younghee Lee

Examples

    sampleDB <- system.file("extdata", "sampleDB", package="IMAS")
    transdb <- loadDb(sampleDB)
    ## Not run: 
    ASdb <- Splicingfinder(transdb,Ncor=1)
    ASdb <- ExonsCluster(ASdb,transdb)
    
## End(Not run)

[Package IMAS version 1.12.0 Index]