R: Summarize a "hlaAlleleClass" or "hlaAASeqClass" object

summary.hlaAlleleClass {HIBAG}

R Documentation

Summarize a “hlaAlleleClass” or “hlaAASeqClass” object

Description

Show the information of a hlaAlleleClass or hlaAASeqClass object.

Usage

## S3 method for class 'hlaAlleleClass'
summary(object, verbose=TRUE, ...)
## S3 method for class 'hlaAASeqClass'
summary(object, poly.only=TRUE, head=0L,
    verbose=TRUE, ...)

Arguments

`object`	an object of `hlaAlleleClass` or `hlaAASeqClass`
`poly.only`	if TRUE, only show the amino acid positions with polymorphism; otherwise, show all sequences
`head`	show the first `head` rows of cross tabulation, or `0L` for all rows
`verbose`	if TRUE, show information
`...`	further arguments passed to or from other methods

Value

Return a data.frame of count and frequency for each HLA allele, if object is hlaAlleleClass; a matrix of cross tabulation of amino acids at each position, if object is hlaAASeqClass.

Author(s)