| GRgetDefs {GRmetrics} | R Documentation |
Given a SummarizedExperiment object created by GRfit,
this function returns a table with the definition of each GR metric and
traditional metric that is calculated.
GRgetDefs(fitData)
fitData |
a SummarizedExperiment object, generated by the GRfit function. |
Given a SummarizedExperiment object created by GRfit,
this function returns a table containing the definition of each GR metric,
traditional metric, and goodness of fit measure in the object.
This is simply a convenient accessor function, equivalent to
rowData(fitData).
A table of definitions of GR metrics and traditional metrics
Nicholas Clark
To create the object needed for this function, see
GRfit.
# Load Case A (example 1) input
data("inputCaseA")
head(inputCaseA)
# Run GRfit function with case = "A"
output1 = GRfit(inputData = inputCaseA,
groupingVariables = c('cell_line','agent'))
defs = GRgetDefs(output1)
# See all definitions (some will be truncated)
## Not run: View(defs)
# See the first six descriptions
head(defs)
# Look at a specific definition
defs[15,]