FRASER                  FRASER: Find RAre Splicing Events in RNA-seq
                        data
FraserDataSet           The FRASER dataset object
FraserDataSet-class     FraserDataSet
K                       Getter/setter for count data
annotateRanges          Annotates the given FraserDataSet with the HGNC
                        symbol with biomaRt
assayNames,FraserDataSet-method
                        Returns the assayNames of FRASER
assays,FraserDataSet-method
                        Returns the assay for the given name/index of
                        the FraserDataSet
calculatePSIValues      PSI value calculation
countRNA                Count RNA-seq data
createTestFraserSettings
                        Create a test dataset
filtering               Filtering FraserDataSets
getter_setter_functions
                        Getter/Setter functions
injectOutliers          Inject artificial outliers in an existing fds
length,FraserDataSet-method
                        retrieve the length of the object (aka number
                        of junctions)
loadFraserDataSet       Loading/Saving FraserDataSets
makeSimulatedFraserDataSet
                        Create an simulated example data set for FRASER
optimHyperParams        Find optimal encoding dimension
plotFunctions           Visualization functions for FRASER
psiTypes                Available psi types
results                 Extracting results and aberrant splicing events
samples                 Getter/Setter methods for the FraserDataSet
subset.FRASER           Subsetting by indices for junctions
