B2M                     Convert methylation beta value to M value.
M2B                     Convert methylation M value to methylation beta
                        value.
QCfilter                Sample or CpG probe filter.
QCinfo                  QC information
calcdetP                To calculate detection P values
combp                   Identification of differentially methylated
                        regions
ctrlsva                 Non-negative internal control surrogate
                        variables
dupicc                  Evaluations of methylation duplicates
estimateCellProp        Cell type proportion estimation
freqpoly                Frequency polygon plot
getB                    Extract methylation Beta values.
getCGinfo               CpG probe annotation inforamtion
getmeth                 Create a methDataSet
ipdmr                   Differentially methylated region finder using
                        interval P values
methDataSet-class       Class '"methDataSet"'
methyAge                Methylation Age estimation
mhtplot                 P value manhattan plot
mpreprocess             methylation QC and preprocessing pipeline for
                        Illuminal arrays
multifreqpoly           Frequency polygon plot
nmode.mc                Estimating number of mode for each row of data
norm.quantile           Quantile normalization.
normalize.quantile.450k
                        Quantile normalization.
oxBS.MLE                oxBS-MLE.
p.qqplot                P value Q-Q plot
pcrplot                 Principal component regression plot
plotCtrl                Internal control plot
predSex                 Estimating sample sex
preprocessENmix         The ENmix background correction for
                        HumanMethylation 450 and MethylationEPIC
                        BeadChip
rcp                     Regression on Correlated Probes(RCP)
readidat                Parsing IDAT files from Illumina methylation
                        arrays.
readmanifest            Parsing Illumina methylation arrays manifest
                        file.
relic                   RELIC dye bias correction method for Illumina
                        HumanMethylation450 and MethylationEPIC
                        BeadChip
rgDataSet-class         Class '"rgDataSet"'
rm.outlier              Filtering out outlier and/or low quality values
