| readidat {ENmix} | R Documentation |
Read in IDAT files and create a rgDataSet with probe annotation
readidat(path = NULL,manifestfile=NULL,recursive = FALSE, verbose = FALSE)
path |
Directory where idat files are located |
manifestfile |
The file name of array manifestfile, which can be downloaded from Illumina website. Bioconductor manifest package will be used if not provided |
recursive |
if TRUE, idat files in the subdirectories will also be read in |
verbose |
if TRUE, detailed running info will be printed on screen |
Probe annotation info can be extracted using command rowData
An object of class rgDataSet,
Zongli Xu
## Not run:
require(minfidata)
path <- file.path(find.package("minfiData"),"extdata")
#based on rgDataset
rgSet <- readidat(path = path,recursive = TRUE)
## End(Not run)