DChIPRep-package	DChIPRep
chip_galonska	chip_galonska
DChIPRep	DChIPRep
DChIPRepResults	DChIPRepResults
DChIPRepResults-class	DChIPRepResults
DESeq2Data	DESeq2Data
DESeq2Data,DChIPRepResults-method	DESeq2Data
DESeq2Data<-	DESeq2Data
DESeq2Data<-,DChIPRepResults,DESeqDataSet-method	DESeq2Data
exampleChipData	exampleChipData
exampleInputData	exampleInputData
exampleSampleTable	exampleSampleTable
FDRresults	FDRresults
FDRresults,DChIPRepResults-method	FDRresults
FDRresults<-	FDRresults
FDRresults<-,DChIPRepResults,list-method	FDRresults
getMATfromDataFrame	getMATfromDataFrame
importData	importData
importDataFromMatrices	importDataFromMatrices
importData_soGGi	importData_soGGi
input_galonska	input_galonska
plotProfiles	plotProfiles
plotProfiles,DChIPRepResults-method	plotProfiles
plotSignificance	plotSignificance
plotSignificance,DChIPRepResults-method	plotSignificance
resultsDChIPRep	resultsDChIPRep
resultsDChIPRep,DChIPRepResults-method	resultsDChIPRep
resultsDChIPRep<-	resultsDChIPRep
resultsDChIPRep<-,DChIPRepResults,list-method	resultsDChIPRep
robust_mean	robust_mean
runTesting	runTesting
runTesting,DChIPRepResults-method	runTesting
sample_table_galonska	sample_table_galonska
show	show
show,DChIPRepResults-method	show
summarizeCountsPerPosition	summarizeCountsPerPosition
testData	testData
TSS_galonska	TSS_galonska
