09c65bc1d78a2a33bc7f5beb17207089 *CITATION
f071f114c33b5a63681a34706be52c37 *DESCRIPTION
989d8ef4f926c07271682e5c49271316 *INDEX
0a1899da2d6de348416c62daad9948f7 *LICENSE
31f2d2b963add27203d67ea0a93c2a68 *Meta/Rd.rds
cc4532b99fe09c5567216473af102ecb *Meta/data.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
59db737ff185c9ae7aff8deeb65af06b *Meta/hsearch.rds
7ae72f9ef11a447309a24c47ceba5807 *Meta/links.rds
589b38a9839f18b9b4dc1a7bdd46e8ef *Meta/nsInfo.rds
188638b92e144ae51853f53857c2d025 *Meta/package.rds
9a8471fb82cb024f85657c7ec2e4ae9e *Meta/vignette.rds
7e155497cf2b9af6003d3fac47a5606d *NAMESPACE
42153617d38fff410d2b7e3554866e08 *NEWS.Rd
d6c68f1fe41ced6e98a766a3757313da *R/DAMEfinder
304dfbf5c47e427595d2e020187de7ce *R/DAMEfinder.rdb
42b3fba97113b5049331878301c5439e *R/DAMEfinder.rdx
c9d2930d4d9c301a5bf786ecae2eded9 *data/extractbams_output.rda
14191c1edb7ae295a9c9838589416b45 *data/readtuples_output.rda
9333d55f6092e6ced4d4b800dc160cf8 *doc/DAMEfinder_workflow.R
ba096bd56bc841fe3502adff53075f33 *doc/DAMEfinder_workflow.Rmd
bc2590b9c1213f3b52a9b4d35e1f0f1c *doc/DAMEfinder_workflow.html
680dc99d32f897e1eb8d7cb9026a9120 *doc/index.html
daf558746caa459d128b1edcfd93915e *extdata/CRC1.chr19.trim.vcf
a3fa6a42464200025a673ef030513998 *extdata/CRC1_chr19.qs.CG.2.tsv.gz
0f29a7e50e6e2979be3a9a51014d1197 *extdata/CRC1_chr19_trim.bam
1a7c9830c7d6b8b09906b1dc7121b473 *extdata/CRC1_chr19_trim.bam.bai
9222a67cd3a6b0cfc18efd1355fcbc51 *extdata/NORM1.chr19.trim.vcf
cbc710962aa110134e2d5afcf3ca86b2 *extdata/NORM1_chr19.qs.CG.2.tsv.gz
8530eed239d8855e2491aa8c4283dccb *extdata/NORM1_chr19_trim.bam
0289955249e6ca9dfc11d3857e8aca94 *extdata/NORM1_chr19_trim.bam.bai
9cc429baf829fcceb7d0bf6d954f72dc *figures/DAME_only30reads.png
819d71dc2155c348f38b8a8c04cd59f7 *figures/DAME_snp_allsamps.png
77cb5e71d84ca11e26254618cb61321e *figures/DAME_snp_allsamps_median.png
8b5f4d1f6c5300c3318e75cd6e4c7742 *figures/DAME_snp_sampledreads.png
69b1d037d321c943b119a2019dc1c58b *figures/DAME_tuple_allsamps.png
5ca20291a9dc0fabd5e7dd7377cf5d14 *figures/DAME_tuple_allsamps_median.png
a9107c0f715cc46a7c8356fa1a6e1014 *figures/DAMEfinder_workflow.png
cffe6fdf85143d33894cf85dd951b0da *figures/damefindersticker.png
9676c9c0ad674f0a2470ca1d4ae560d6 *help/AnIndex
1a490f6fb4af759c743df813e5a2c7b8 *help/DAMEfinder.rdb
5f6881cbb862cd1307256698151004a1 *help/DAMEfinder.rdx
a026bdfbab636abdcbdc5d30bef740c1 *help/aliases.rds
f6c513a2892f18cb1674763bf2f01d9b *help/paths.rds
fb64a3cf8774886598953f18ada9fe10 *html/00Index.html
e512f2cb52f1568d7f65183499a41d7e *html/DAMEfinder.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
bde7f98109e0c4d129f3f948bc80ce5d *html/calc_asm.html
b7cbd734867d5fdee5390a88d536374e *html/calc_derivedasm.html
2b31770cf6294461a0c3d0df627edd79 *html/calc_logodds.html
a1733d0f338b5669419307d9bcb656f5 *html/calc_score.html
7f438fc92c88c384f2e1427d56a92bd6 *html/calc_weight.html
f495857c18ea0aace3872dc4ac9b37c0 *html/dame_track.html
d67ea39789da83c8200a66e385538231 *html/dame_track_mean.html
3154bd21f3691b4832cb1c4043b4d834 *html/empirical_pval.html
ac5ef9cabf5b2c08144228b4bc840ca0 *html/extract_bams.html
05ae333ef5862a647e570e07c6280252 *html/extractbams_output.html
2ee92d7d8a950f0c213efea65b28fea4 *html/find_dames.html
f987d2d196256af8e79cd28760b2e694 *html/getMD.html
1beb6a45760e6ea8bcfa16aa9cbdf6ef *html/get_tstats.html
8d9b18d794e4a57f416eb54708ae23a2 *html/methyl_MDS_plot.html
167b4700286cc28422cd985686626f26 *html/methyl_circle_plot.html
2f5a322a2e1c6bc06fa361445f0dbe21 *html/methyl_circle_plotCpG.html
a2ed095b766a17f7e8d666043b4e3883 *html/modulus_sqrt.html
bbc43131dbd35dc31bc523dd431ba8b2 *html/read_tuples.html
d6ee0e5452eac381f28f569afded14c2 *html/readtuples_output.html
07fbe81a5972c377cf555aae42336e43 *html/simes_pval.html
31f3a45f3861e0a158ab6bfc4f67eb12 *html/splitReads.html
52f98e1f1b0a186bd57f463553e8f624 *scripts/extractbams_output.R
d29bf6b8be58a52fb355591eb4d6e11a *scripts/file_description.txt
0e79c5fc275fb6ab2c7f30b38347c4b6 *scripts/readtuples_output.R
