4ad19164b71f48a159aee0245eee9ad2 *CITATION
1c8c0d8d9b074a05e849bae49e594799 *DESCRIPTION
bdebbe6a515e01b9152333436324d824 *INDEX
5ebcb22c8d3163bc2e7db7d7482df9b9 *Meta/Rd.rds
9e4c22a9840cbfaf81d83152b801aebf *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
7b7d411f210e21248d24353afb386745 *Meta/hsearch.rds
d75faf0c4ecd0a249a48797d8f06bf86 *Meta/links.rds
b812c5fa5dabede73bbb0df2e71a3c94 *Meta/nsInfo.rds
27ab21937658b69cd9595469fcd2c845 *Meta/package.rds
ae23236c5aa5544652120eae9b4079c7 *Meta/vignette.rds
86c0b651bfa817b420bdda5df31a7ac4 *NAMESPACE
590504cacc0084a282f24e3746aedeb4 *NEWS.Rd
ebf0fc819595d631b8bf280c4b049940 *R/CrispRVariants
c0ea293319db2c8c51cc47307638eadc *R/CrispRVariants.rdb
93119d46a843ee3f95fb13c094845ad2 *R/CrispRVariants.rdx
c86510b0efb0e0255ab726e561fbbaab *data/Rdata.rdb
c69ac2184fd196465f94d97bea0f5410 *data/Rdata.rds
c849bac08cde56179a6f5fcb8c6d8830 *data/Rdata.rdx
80f8c2fbcf76e450958d2c32265b34fc *doc/index.html
1dbcdff8aee5885b08d9f481eb4b9f68 *doc/user_guide.R
030ad422de6cac5ecb1ef5c3ceaf6fc0 *doc/user_guide.Rmd
98c76474af2c47aef6ced6f4b5ec8e03 *doc/user_guide.pdf
65dcdf1d72c2cb6532b582faf9648242 *extdata/Danio_rerio.Zv9.73.gol.sqlite
3d09e19e1a84f4163a94c7ac41b4d7a1 *extdata/GRCz10_81_ptena_txdb.sqlite
cb32a40b50b777c9872e74844182b9cc *extdata/IM2033.ab1
31f41ba5b5f3ffe65a72638ac48d59ee *extdata/ab1/ptena/phenotype/embryo1/AB2001.ab1
87fbf13a52e1801266cb385c7919a4e9 *extdata/bam/ab1_ptena_phenotype_embryo_1_s.bam
a5faefe3c25efbb5817f4235b9b7ce57 *extdata/bam/ab1_ptena_phenotype_embryo_1_s.bam.bai
aa172362f53fb84dfc85ff43e8b58232 *extdata/bam/ab1_ptena_phenotype_embryo_2_s.bam
64f942fe93f6cb37549443b020be66bd *extdata/bam/ab1_ptena_phenotype_embryo_2_s.bam.bai
dbfe81d150812e6f46063d6e3af8a7e9 *extdata/bam/ab1_ptena_uninjected_embryo_1_s.bam
eee2ae352b4a9fedb9ceff871687b1a8 *extdata/bam/ab1_ptena_uninjected_embryo_1_s.bam.bai
236be679c9bc2a2f812ff382455e885c *extdata/bam/ab1_ptena_wildtype_looking_embryo_1_s.bam
eada6440c415bffc39581741c9d0a790 *extdata/bam/ab1_ptena_wildtype_looking_embryo_1_s.bam.bai
4a3d7a75593c3a87d833e05158e4f380 *extdata/bam/ab1_ptena_wildtype_looking_embryo_2_s.bam
c3644513e0f3ccf53022a838cac19fb1 *extdata/bam/ab1_ptena_wildtype_looking_embryo_2_s.bam.bai
a049fec3b3743cdbcab988593e07fe95 *extdata/bed/guide.bed
2d865f43e37fb89160b910b38bf2d5d6 *extdata/cntnap2b_test_data.fastq.gz
cf0e50eedb184b713c6f3d8a5d134b95 *extdata/cntnap2b_test_data_guide.bed
de83e1ebb8d157390a22a65d54f41f23 *extdata/cntnap2b_test_data_s.bam
f02d12f0ea6761b0eccc19df7a7a1b6c *extdata/gol_F1_clutch_1_embryo_1_s.bam
25956b49d20dd443e4ce9ca7e943796e *extdata/gol_F1_clutch_1_embryo_1_s.bam.bai
15010247fef191cf1d68d54cd20677da *extdata/gol_F1_clutch_1_embryo_2_s.bam
d0cdaeb0fda0197a6d62454d1c39b2ca *extdata/gol_F1_clutch_1_embryo_2_s.bam.bai
853c55081cbbc183fc46976430fa650e *extdata/gol_F1_clutch_1_embryo_3_s.bam
cc78c8e5d1d87f8571a6b71e1bd555ee *extdata/gol_F1_clutch_1_embryo_3_s.bam.bai
4cbc3ed5188a19125e6d50a27ff029e6 *extdata/gol_F1_clutch_1_embryo_4_s.bam
1ab0458554627ac4566378c536bc12a4 *extdata/gol_F1_clutch_1_embryo_4_s.bam.bai
9b27d523742d463169189d8c72060f7a *extdata/gol_F1_clutch_1_embryo_5_s.bam
6ef0cf85fe25ad4862a63f1aec0cf394 *extdata/gol_F1_clutch_1_embryo_5_s.bam.bai
411c8683cbd70b8d9cb9801ac5999b38 *extdata/gol_F1_clutch_1_embryo_6_s.bam
a1b074693d1b5052595a594e37b3ae96 *extdata/gol_F1_clutch_1_embryo_6_s.bam.bai
d677e388666d320a0dc80e187b4d30db *extdata/gol_F1_clutch_1_embryo_7_s.bam
f87f533910ac9896d9e4b797a885d18c *extdata/gol_F1_clutch_1_embryo_7_s.bam.bai
9e6c0eb2312197f90d0b2f352dda6b10 *extdata/gol_F1_clutch_1_embryo_8_s.bam
3a778946d9df16b7926f382258402dde *extdata/gol_F1_clutch_1_embryo_8_s.bam.bai
672eab0fa40051a31a81c9c174670eb8 *extdata/gol_F1_clutch_2_embryo_4_s.bam
1b157a9c4b418311efc6caabec3cfa38 *extdata/gol_F1_clutch_2_embryo_4_s.bam.bai
89b05c3e000a2e938ea38a1f90366ac2 *extdata/gol_F1_metadata.txt
01243899f4f39295d5efa23b382c3949 *extdata/gol_F1_metadata_small.txt
a8ef6a3063c96abb61e28f05667eb361 *extdata/metadata/metadata.xls
dcc5845212d1e1b64d1956793fb683f9 *extdata/ptena_GRCHz10_ref.rda
a569e6388cd16318dd2bad059cad710d *extdata/wtx_Sanger.png
af3584ce04196fafd561da7cd20608a7 *help/AnIndex
62f65e786fc1071b75d54dbe74608559 *help/CrispRVariants.rdb
0ff3ba4873641deedd14183a65c35832 *help/CrispRVariants.rdx
09dbc848bdc07bee1560be669789bb0e *help/aliases.rds
355a4b9efe3272912853de8b77cc8d25 *help/paths.rds
d015467c497939492bde5ab856da50bc *html/00Index.html
d451da04d1b51a24cd0934eaac3fffe4 *html/CrisprRun-class.html
7ac32dc45fbc01ec24eba3435050e2ef *html/CrisprSet-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
210bf8a6c85e31c9542f6e1050dc4408 *html/abifToFastq.html
b4b4df4e2bd319a7fa13958368fcb4c9 *html/addClipped.html
dbb4401c7e3f87b06009c8587b84617c *html/addCodonFrame.html
3ff4aa6f1c258c4eb957f14f2a6444f5 *html/alleleLabelsHelpers.html
33468e9016ff84159873376eabe32a75 *html/alleles.html
33aa77c6060b6c7935916c09bbef6cad *html/alns.html
2a619a3db62aae2ee4b742e9a50151b3 *html/annotateGenePlot.html
df1315071f84f586acab22e59a700606 *html/arrangePlots.html
c723fe5b0bec7066d528e44b149cbe71 *html/barplotAlleleFreqs.html
13c211ed88c9d050c011c209f1124cda *html/collapsePairs.html
0f28de666c54054a4f9e712f6dde6b67 *html/consensusSeqs.html
2bd87a6cf8a3d90b41db4718e3207b59 *html/dispatchDots.html
35048ed380ec0fcba4984c5e87f4270e *html/excludeFromBam.html
5e2f38f27cc3850cea9e619bca1fb51a *html/explodeCigarOpCombs.html
e60bf1e373bee17c0b3998c9b70dc544 *html/findChimeras.html
21925b1e809fca5a582b70b344c6b84f *html/findSNVs.html
f673491b41b1a0030793c304726b60e6 *html/getAxisCoords.html
af500092f1115423d27ddcbe44179b21 *html/getChimeras.html
5774358a18fdfe76d37268f746fb9699 *html/getInsertionsTable.html
045f8b124d934b76d6fbd7352d37f8fd *html/gol_clutch1.html
f84c38e7a71cedd92dde487404f42f00 *html/indelCounts.html
5d93fc285586cc07b751fea30f75cc03 *html/indelLabels.html
f6b1d7927e36cd5663d8a1fa0f5a2fe7 *html/intersperse.html
d25b3559bcd3ad3460496e8419e38184 *html/makeAlignmentTilePlot.html
d0d54c016ddf281358e56b7efd847fd8 *html/mergeChimeras.html
5ee20e568c7b2335d249d4782e678986 *html/mergeCrisprSets.html
4452f57db32e792254fc9be5248d0169 *html/mismatchLabels.html
5c155993f6048ce6444ee3df931e7a34 *html/mutationEfficiency.html
8d00c4ca04feac6b8b43a2eadf689226 *html/narrowAlignments.html
e324450eb5bd89479dd66661d9035857 *html/plotAlignments.html
0107f402fdbc47254aa44b17171a282e *html/plotChimeras.html
020a231b1d7b57b935540806d843d708 *html/plotFreqHeatmap.html
e2d3a204d8164f6248ffc7f77b5639f2 *html/plotVariants.html
0d3bcdd9292f8954c3bf54faf865dd1c *html/rcAlns.html
d184b6c0394bc10a1fcd1d8d179a61f5 *html/readTargetBam.html
4ed5dbe27c5770bde682e5a0b9d24f78 *html/readsByPCRPrimer.html
6a377b132794dc7c688e8ea267010d56 *html/readsToTarget.html
cea3d85af94e36d3a3f60792bbb5b470 *html/refFromAlns.html
1c894af14d636740409850ad9ea2e538 *html/reverseCigar.html
2803a810c7e4cf0d1c3285d80341955d *html/rmMultiPCRChimera.html
77ae26c05d3aaaf6dbe5632afba549b9 *html/selectAlnRegionsHelpers.html
94464df976a04cdc71a022749d27edf8 *html/selectOps.html
7dc14a95d2d587a99c1b25353ca716ad *html/seqsToAln.html
0636bef5bcd38d23167019fa73ec4360 *html/setDNATileColours.html
4906686e3a798160044bf3063db2d417 *html/setMismatchTileColours.html
9f9b8f69926f1827f9f9804cb49d28d1 *html/transformAlnsToLong.html
89423e054a5a3348c6c56a3457ae7424 *html/variantCounts.html
719358ddd3752ec76bfa5021aedc523c *html/writeFastq.html
