getNearestFeatureIndicesAndDistances {ChIPseeker} | R Documentation

## getNearestFeatureIndicesAndDistances

### Description

get index of features that closest to peak and calculate distance

### Usage

    getNearestFeatureIndicesAndDistances(
      peaks,
      features,
      sameStrand = FALSE,
      ignoreOverlap = FALSE,
      ignoreUpstream = FALSE,
      ignoreDownstream = FALSE,
      overlap = "TSS"
    )

### Arguments

`peaks` | peak in GRanges
`features` | features in GRanges
`sameStrand` | logical, whether find nearest gene in the same strand
`ignoreOverlap` | logical, whether ignore overlap of TSS with peak
`ignoreUpstream` | logical, if True only annotate gene at the 3' of the peak.
`ignoreDownstream` | logical, if True only annotate gene at the 5' of the peak.
`overlap` | one of "TSS" or "all"

### Value

list

### Author(s)

G Yu

[Package ChIPseeker version 1.24.0 Index]