6837e7ef6f75ce25a341c43546eafa1c *DESCRIPTION
6266cd4977f900afcaf6a175785cdeff *INDEX
2cb702a25a6dab24a4dbe10bd0244196 *Meta/Rd.rds
9a1544dc516dcb698bb98677e84ef034 *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
3bca11c54dc734edc7eb9f894206de15 *Meta/hsearch.rds
7c7f354084bf3fea3da7a5de008962a2 *Meta/links.rds
9bc1841ba188a723c5759edfc94de71e *Meta/nsInfo.rds
323c1fe2847497a813ca88e9486427a9 *Meta/package.rds
fa5925cf0e85b9e9df491a9b4bcc14fc *Meta/vignette.rds
f22c792c43684d8f72784c7dc6e5d3d3 *NAMESPACE
2ab266dc2d43775aa14ad711d1b68d78 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/ChIPSeqSpike
82afb5ebfdb25979d48cc26d16b263ea *R/ChIPSeqSpike.rdb
54a2d6ed6a9697effe0fdbb338a45cda *R/ChIPSeqSpike.rdx
b25a6ef65708280681dd50fb7c27dfae *data/datalist
fade11720c5a57972e754b0f82ffc2bc *data/ratio.RData
798d46e8bbbc03aabeed3d10bd64ed9a *data/result_estimateScalingFactors.RData
509e53f9726711bcc54a026b819831f7 *data/result_extractBinding.RData
f461d83b5117306ab31ce332832e0e4e *doc/ChIPSeqSpike.R
5b05e393cf652375d4bab055c4ecd4c8 *doc/ChIPSeqSpike.Rmd
3e008e5a9d9295277e0aa135c5e5ea46 *doc/ChIPSeqSpike.pdf
0e47348204dd0833c3e9601098464a29 *doc/index.html
e1b0857cfa8b9dcb2985422937745d31 *extdata/bam_files/H3K79me2_0_dm3-filtered.bam
b68ec110a950b71a3b13baa15a5dec0a *extdata/bam_files/H3K79me2_0_hg19-filtered.bam
e59bb25fde9cda6353c2d9bbcabcaa3e *extdata/bam_files/H3K79me2_100_dm3-filtered.bam
80bd8e48d6dcda4d760ac1602c31cf9e *extdata/bam_files/H3K79me2_100_hg19-filtered.bam
d6725b83c9229d109a291c3e4b984e7c *extdata/bam_files/H3K79me2_50_dm3-filtered.bam
f3c641290c9b4376058edf23eb6f72ae *extdata/bam_files/H3K79me2_50_hg19-filtered.bam
b2e75b31f0316749aa36a3d9b7c4a761 *extdata/bam_files/input_0_hg19-filtered.bam
8b8148adb9f17d2736a37afedd48a7d6 *extdata/bam_files/input_100_hg19-filtered.bam
7673e3b31cb43524e138b75c1e159cbf *extdata/bam_files/input_50_hg19-filtered.bam
87573393051fa168552ed7cb39dfe7ef *extdata/bigwig_files/H3K79me2_0-filtered.bw
b39be71651fa682c7ca5e74471b99356 *extdata/bigwig_files/H3K79me2_100-filtered.bw
9484358670dca7886ac5c6b183633858 *extdata/bigwig_files/H3K79me2_50-filtered.bw
8a9d30626ddffebcfcb53d73f109debe *extdata/bigwig_files/input_0-filtered.bw
bf1a116f02a8b755d2090aefccd66726 *extdata/bigwig_files/input_100-filtered.bw
3b9df7633e8119547fcd288983cec485 *extdata/bigwig_files/input_50-filtered.bw
0d8a6330967fd2321f34c569b5c49c76 *extdata/empty_files/endoBam_empty.bam
0d8a6330967fd2321f34c569b5c49c76 *extdata/empty_files/exoBam_empty.bam
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/input.wig_empty.bw
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/inputwig_empty.bw
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/inputwig_empty.wig
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/wig.file_empty.bw
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/wigfile_empty-RPM.bw
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/wigfile_empty.bw
82f6c1a5a915e077d1d5e1fb8ffd5dbd *extdata/fastq_fasta_files/endo.fa
82f6c1a5a915e077d1d5e1fb8ffd5dbd *extdata/fastq_fasta_files/exo.fa
54b6999818010f2f7cb7bd8dec20bbe1 *extdata/fastq_fasta_files/reads1.fastq.gz
4ef102a93caa7e70a8bad42948847a75 *extdata/fastq_fasta_files/reads2.fastq.gz
a009a7951861bd4ba706d2ef0111e2b4 *extdata/info.csv
fdbd4dfbae936b378365d7e043376e5a *extdata/test_coord.gff
1d9f6c9669202dd4a146d02723e429c9 *help/AnIndex
8ba84b145f844cdd4e5d788a8dce0408 *help/ChIPSeqSpike.rdb
48dc2841796123766717fe2862c26830 *help/ChIPSeqSpike.rdx
4a44882bcc3d911d0bfcb40c61a6e148 *help/aliases.rds
bf7d0630d38c602f7dd84536ec8f8051 *help/paths.rds
d83122b78e5e17296ed095dc0896f2cb *html/00Index.html
fa791eb2045031e5a7fdea464b021669 *html/ChIPSeqSpikeCore.html
ccb46ed605e6a193255ad5aa32cdbbe5 *html/ChIPSeqSpikeDataset-class.html
bf073b4ef5ee7c20f247bde5ccc3c059 *html/ChIPSeqSpikeDatasetBoost-class.html
9c6059376760cabd29a3eb56410e59d6 *html/ChIPSeqSpikeDatasetList-class.html
29f8c59cf6a13bdec419845c2d014fd3 *html/ChIPSeqSpikeDatasetListBoost-class.html
a3ef9e747c79ee15989437406dda2c05 *html/Experiment-class.html
f7a8a4d8f58147a6a91b689d50d12a69 *html/ExperimentLoaded-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
5eecdaf3969d5cd3bf607a4e61787cba *html/averageBindingValues.html
21316d8e15a7f27462bcb9b856ebd98d *html/bigWigFile.html
510e85106fc7d57f9805bca29c55986a *html/boxplotSpike.html
34110156e81b07ca0d24f1933dc60111 *html/count.html
4c688db8811380d877a7c949e988d99b *html/datasetList.html
6551c4ee0236f68c14988fedfcf99e53 *html/estimateScalingFactors.html
a6c255f5a4abdb0a571b3519533bba2c *html/exoCount.html
7bb4fcc3123b759345aa5510e654ca19 *html/exogenousScalingFactor.html
1dfd594bd75a9ff2ea47870172f9419a *html/experimentList.html
92cc4f18c64990f39fb3d1d9a6b6647c *html/exportBigWigs.html
bdb3d0a6a68a373b6b2b48c5ba1e1939 *html/extractBinding.html
38b421d086b8a00721c4bcfbdb291a97 *html/getAverageBindingValues.html
85dc15ae5dbab14a67cf449ab368f07c *html/getBam.html
94ced3b01b1ea246b0ed440706ef1722 *html/getBigWigFile.html
f6c0f72fa6955f2a799c2edee341557c *html/getCount.html
a8c18b3754487705fffd52ed87603139 *html/getDatasetList.html
4fa306e716947d1477030875f6630075 *html/getExoCount.html
fb1bcf920812d46604ed068da1662c71 *html/getExogenousBam.html
cba36b21d760515570886871fb85c5d7 *html/getExogenousScalingFactor.html
cc8799ef3dcb35e08219239d70798b28 *html/getExpName.html
d113cf60d5e7195ab1b2b3bc92c02397 *html/getExperimentList.html
a13d209f4e3c6cba7b9c32125a23c09d *html/getExperimentListBigWigs.html
073decc8b24b1af61e634794d2e8b8fd *html/getLoadedData.html
503e2e43e9b3faa7c0551f6fa87b4451 *html/getMatBindingValues.html
473581978126db2b2f054ef8569e290c *html/getRatio.html
023ad2edcfa18efb80721b8a42868b28 *html/getScalingFactor.html
68fd9b77932dcb679e57fd177fc4e9c2 *html/inputSubtraction.html
f79513e7622cd9c3a391afe9df784623 *html/matBindingValues.html
2b7f850cb67634b7cc957718cfcad1f5 *html/plotCor.html
0ee08875a9f645b34d1849753f0e2d66 *html/plotHeatmaps.html
443c0f627cc6d1368a575bea545c075f *html/plotProfile.html
7096cf5175239afb3c345f5d42802615 *html/plotTransform.html
686fbe598b7ad599e59fe05c0bc8d98e *html/ratio.html
b585c64086d8a3307951c8c1a24386dd *html/result_data.html
3eda0a173a68b4b717afa8bf0d225a91 *html/scaling.html
cb538105491872f3a8653e4db3dab6d6 *html/scalingFactor.html
0bec2c514db4032f423deaf80265cea2 *html/spikeDataset.html
4cf2779fd85f81f62814a3480f7d248f *html/spikePipe.html
d1458ec749780b00bae2480934d85500 *html/spikeSummary.html
