| convertNomenclature {CHRONOS} | R Documentation |
Convert genes identifier nomenclature.
convertNomenclature(ids, org, from, to)
ids |
Vector of gene identifiers |
org |
KEGG organism identifier |
from |
Initial identifier type |
to |
A vector of final identifier types |
| EntrezGene ID | 'entrezgene' |
| Ensembl Gene ID | 'ensembl_gene_id' |
| Ensemble Transcript ID | 'ensembl_transcript_id' |
| Ensemble Protein ID | 'ensembl_peptide_id' |
| HGNC ID | 'hgnc_id' |
| HGNC Symbol | 'hgnc_symbol' |
| HGNC Transcript name | 'hgnc_transcript_name' |
| Refseq mRNA ID | 'refseq_mrna' |
| Refseq Protein ID | 'refseq_peptide' |
| UniProt/Swissprot Accession | 'uniprot_swissprot_accession' |
| UniProt/Swissprot ID | 'uniprot_swissprot' |
| UniGene ID | 'unigene' |
| UniProt Genename ID | 'uniprot_genename' |
Vector of converted gene identifiers
# Identifiers to be converted
ids <- c('5091', '5105')
# Convert to HGNC ID, Ensembl Gene ID and UniProt Genename ID
from <- 'entrezgene'
to <- c('hgnc_symbol','ensembl_gene_id', 'uniprot_genename')
## Not run: res <- convertNomenclature(ids=ids, org='hsa', from=from, to=to)