CHARGE: CHromosome Assessment in R from Gene Expression data

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Documentation for package ‘CHARGE’ version 1.7.0

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CHARGE-package CHARGE
bimodalTest bimodalTest
CHARGE CHARGE
clusterExpr clusterExpr
cvExpr cvExpr
datExprs A SummarizedExperiment from a publicly available RNA-seq data set, where the samples were sequenced on a Illumina HiSeq 2000. The data set is GSE55504 and contains 16 primary fibroblast samples where 8 are euploid for chromosome 21 and the other 8 are trisomy.
exprFinder exprFinder
pcaExpr pcaExprs
plotcvExpr plotcvExpr