Utility: Counting overlaps taking into account scores

Description

Similar to countOverlaps, but takes the score column into account.

Usage

utilsScoreOverlaps(query, subject, ...)

Arguments

Value

vector of number of overlaps weigthed by score column.

See Also

https://support.bioconductor.org/p/87736/#87758

Other Utility functions: utilsAggregateRows(), utilsDeStrand(), utilsSimplifyTxDb()

Examples

gr1 <- GRanges(seqnames="chr1",
               ranges=IRanges(start = c(4, 9, 10, 30),
                              end = c(4, 15, 20, 31)),
               strand="+")
gr2 <- GRanges(seqnames="chr1",
               ranges=IRanges(start = c(1, 4, 15, 25),
                              end = c(2, 4, 20, 26)),
               strand=c("+"),
               score=c(10, 20, 15, 5))
countOverlaps(gr1, gr2)
utilsScoreOverlaps(gr1, gr2)