90f2fd9569ff1ab9a9e85c771e0dce40 *CITATION
8abb8003aff5bc10c151a8ecb8559dbc *DESCRIPTION
1afbfbf1e439bb9f1460b3ec31d571c2 *INDEX
29a9012941a6bcb26bf0fb4382c5dd75 *LICENSE
fcc483e1346cff4c287fede29c2e8438 *Meta/Rd.rds
9f6237cb735adebe05065a99df11f909 *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
b0ab668341f62f5450aff3968d12ba17 *Meta/hsearch.rds
1d1a76f633837cc61703b9c2358c5a50 *Meta/links.rds
d9cef49edfa6c2e733d43166152360d1 *Meta/nsInfo.rds
f71d2b18599dae047349070f21d4c4a8 *Meta/package.rds
93b88e9c56189367443e3a1a7dbf7344 *Meta/vignette.rds
dc1d75887bfbbabfb69a798b3e62c807 *NAMESPACE
3aadbb010cdca8636bc58b6b8fe266c3 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/CAGEfightR
cee9f16c1b780ec07b565268edce791c *R/CAGEfightR.rdb
db1db442f1aebb17c466e7dc651df13b *R/CAGEfightR.rdx
76ac82ce1e7a1c1fdd3832a356efb94c *data/Rdata.rdb
272f30ff2f2307df55e4301336c46344 *data/Rdata.rds
c59cd1d47e3e80597ffec0b805d5851a *data/Rdata.rdx
fc7d963ca2f0a9fbbb7ed62dacdea4a9 *doc/Introduction_to_CAGEfightR.R
9728419f0f7d7181bbce11d5ba46ba89 *doc/Introduction_to_CAGEfightR.Rmd
456611f5ca76b6deb3a805e37e91fad6 *doc/Introduction_to_CAGEfightR.html
3868bb4ec18148ed55d531bbe816e5e3 *doc/index.html
d1addb1b161c5d2d029a54dbf03aba45 *extdata/mm9.C547.minus.bw
12abbe7c0e853f44d353c3f819055f32 *extdata/mm9.C547.plus.bw
4c3a45077f5ecf6e93427c4800a0085d *extdata/mm9.C548.minus.bw
56befdc837745f8b2a5811e3ea94f8b0 *extdata/mm9.C548.plus.bw
246381ce67e76f4f772af9406fddd109 *extdata/mm9.C549.minus.bw
ac58aa74ba527e06166c70747ab63537 *extdata/mm9.C549.plus.bw
d9e2e06e8f1d7e09a790e5cd9fe934a8 *help/AnIndex
52ef236a3c9f67eb3e6b91335e0e778e *help/CAGEfightR.rdb
4996702481b6186ff04a551ffbf2cb09 *help/CAGEfightR.rdx
499bc9e39200f13c22941d7cbc37f29e *help/aliases.rds
2a4f4b3c28207c4b495b39a0398a60e1 *help/paths.rds
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0fc56680a12e61b068cb48da0a0dcd92 *html/assignTxID.html
2d6716bdfd7c743b64806a47dba6a619 *html/assignTxType.html
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b7aa46d395abb5f6980b4f04acb1fa99 *html/bwValid.html
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170a70d97e0bf749741a1e524c0cb394 *html/calcPooled.html
6e7d2bde6dcfbb5725173f90d82bfda2 *html/calcShape.html
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0744c07a4f324a07b2ff12c7aac2d58e *html/calcTPM.html
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87e98a11a615c3c23f08030805224527 *html/checkCTSSs.html
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1ffd4110c7afed788cd7c163b6f491ff *html/checkPooled.html
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13f62829d07ad7bee5ef7ec7edb3f98e *html/clusterUnidirectionally.html
20ca63e014dd153241b862b6f4dbd8ca *html/combineClusters.html
600bfc3cfa5fe794c52d4982e705bac4 *html/convertBAM2BigWig.html
8f6bc2d578083ef075ff5dcce8f5f4c1 *html/convertBED2BigWig.html
18df0727b087bf5739aca1684278c685 *html/convertGRanges2GPos.html
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2ad15525641bd5cce110789d2146f257 *html/findLinks.html
ea8a801a5ed5378015e19925b836d141 *html/findStretches.html
8b8c8eb12d4a4a4e7975b844702315a0 *html/quantifyCTSSs.html
31d13ab57319ad0a88148d10953b7090 *html/quantifyCTSSs2.html
0e0fb10fff7f50d7c39c6545e7b3119f *html/quantifyClusters.html
91ce824c0fbc14bd502f1efacd288c6f *html/quantifyGenes.html
2aa191b469c72bd94d138f78f2f12c81 *html/quickEnhancers.html
a71a0c2f8f25d85a7f95ede23f69abe7 *html/quickGenes.html
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619926b7483689876f2dbd3c5b69d1df *html/shapeIQR.html
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2a8c35e6efe7dd03f3f012606dc2d969 *html/shapeMultimodality.html
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1b09bf333afccd9cb9a75262495d47be *html/trackBalance.html
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c6358c8aee58ec50fd7fa6a22fa17b43 *html/trackClusters.html
543fe48bb47cef2b60dbb4767a2745e1 *html/trackLinks.html
e44a0ffa08acf0d344d24068531807ff *html/trimToPeak.html
573785a96d51a65b6b3f0ca28f0e751f *html/trimToPercentiles.html
3527cd8fe4d5248081367ae6f72bb07f *html/tuneTagClustering.html
4c4fea295622c35a58c968eaef16fc1b *html/utilsAggregateRows.html
2659567f3259ac37ca84f6c94e581752 *html/utilsDeStrand.html
5539f6709c403bce3a3e8e4277ebb768 *html/utilsScoreOverlaps.html
6512091a0cd7b2846041890728ad04d9 *html/utilsSimplifyTxDb.html
