d868e80d523ace4d34fde01b5047b083 *DESCRIPTION
776a71e423f00192c53ea99be889f587 *INDEX
77e993dd6e717e675de9821c09a1844f *MSIsensor/MSIsensDing.csv.gz
95c9ff0370873c95cb49f31a6af85b0f *MSIsensor/dingMSI.rda
cf5b057ee25b5694ab4c08398bf101a4 *Meta/Rd.rds
9038ccf3efdea4f6eb3c6bfcade6fa73 *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
7c8ad8ae5960c25d7cd130201243f23a *Meta/hsearch.rds
c145e8ba0a26b8c3a2e512b266aae173 *Meta/links.rds
3e492e7c7036390b715b8f557d4cefcc *Meta/nsInfo.rds
da2664ceac808667c83d54c576907d77 *Meta/package.rds
2edf2995760d448ef8003700a99451fa *Meta/vignette.rds
0532890aef7c9c52390b3f62ffb99bb2 *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/BiocOncoTK
d842b0e4d2511cfae4c32a34cef24195 *R/BiocOncoTK.rdb
43e5e6b3fb3ed6cb0185fec265027d59 *R/BiocOncoTK.rdx
2b79168c4dd5c0244218fbfee9bbc130 *data/Rdata.rdb
8805ce5ac0f466fcd49b759150ecb5b6 *data/Rdata.rds
4c91fb832a2406267e8e8fe32355289a *data/Rdata.rdx
f7e0bdfd97580b46415a6cab32d5ecb5 *doc/BiocOncoTK.R
0edd56a5d1ff634dfc0c53c5a637aa57 *doc/BiocOncoTK.Rmd
7c5e7a87d46170a00698f6b979f383a9 *doc/BiocOncoTK.html
77a0ec59669007c221d5d0da9fffab4c *doc/curatedMSIData.R
92cd58130920b0df9e2b092b6afafb12 *doc/curatedMSIData.Rmd
bd46f4eaa366c85c4fca941aa573c4b8 *doc/curatedMSIData.html
268c74e7519e6d92bb6bb239305a1a1f *doc/index.html
8cfd261c256611a65dfe58e63700d051 *doc/maptcga.R
f724858d731a4c0ef2e01fc3047ecc59 *doc/maptcga.Rmd
7dbe804fc0655c5d18b389486e32a4eb *doc/maptcga.html
28a61a2f71f5872d0e1836663ed78147 *help/AnIndex
8d30330e73271938faa226bc2b7ed30e *help/BiocOncoTK.rdb
f719423045058d15fd603c880478ac79 *help/BiocOncoTK.rdx
e9290199b1c5a524dd8fc2725672e1b7 *help/aliases.rds
4811bc28b1f0e6a2f2d908bf0aa24dec *help/paths.rds
c31a6ff5cc631e46c94af0eb250ddc37 *html/00Index.html
0faa5d4a1a870921a62437ef1f13ec10 *html/CCLE_DRUG_BROAD.html
cf32d9887abe2420893f86ac8117d8cb *html/MSIsensor.10k.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
7284cc013a9955362a4e57540a815237 *html/TcgaMutCounts.html
76ece3f0faadeff9407efcfa2b0c8ad6 *html/TcgaNIndWithAnyMut.html
35642f5014703506dd6487850505a6fd *html/add_sym.html
831f8ee978966c7ef780a819af5eb395 *html/annotTabs.html
00dde2679cbe9893a17122fa4b174aaf *html/bindMSI.html
1d5d501ad33c39a944183aeed6a36075 *html/bipg_tests.html
3f45b1014ef68e4719df2ae78517e611 *html/brcaMAE.html
83689e1776fdaceda70ceae5651e27e0 *html/buildPancanSE.html
6baf42dbf87658d43eab41a5af5dc1f8 *html/cell_70138.html
4ab659605c856909c5805ede551f69f9 *html/clueDemos.html
953fb4a23941603f80e1672110a81f09 *html/clueServiceNames.html
b84d8d180b598ae54ea5c4f70763bfc2 *html/darmGBMcls.html
4832021e22f76b83a84a60cad5716cc2 *html/dingMSI.html
f3c5b5591a557f384df7776ad66993a3 *html/featIDMapper.html
ee552c547b80b7215c1a1599a2855524 *html/fireMSI.html
6ecdd32ced79b6bb170df4bfcae86668 *html/get_plates.html
dd68e95d0c078d1f696b0d3fdfc17f60 *html/ggFeatDens.html
71b47773a338092921a01157aed67489 *html/ggFeatureSegs.html
b4b35abbe785ab382530aa4e6f5f99cf *html/ggMutDens.html
6c0937db0f0e747b2e7f9beb88b7c000 *html/icd10_c.html
5071cdd810d98feb6d4e1dab1fa7d7ab *html/k23sig.html
baef3ebc16dec62658c1b8b66004e7c8 *html/kang_DNArepair.html
7f46eee4285ebaa286e0b998f5a019f8 *html/loadPatel.html
df6d9a09a7a23cec7923543dcec17e44 *html/log10pl1.html
3f30f2a38a1c6453b55b753ca2138eb9 *html/map_tcga_ncit.html
713e9b82553778ac0d48f10abe30aaf6 *html/mc3toGR.html
a54bfac012e45437a0fd9880e9c034bd *html/molpo_3utr.html
ccaf2fd619152dffcc4b78f28c763444 *html/molpo_5utr.html
71141a90dab026436dd73e2f08faeff6 *html/molpo_CDS.html
76feaf3b3ffc0454038a68e847e01fc8 *html/molpo_WGS.html
b031b47ab4e9292754ac5e74928d9eec *html/multiviz.html
a6de95f6c9fd00394bc5399ebe691354 *html/oncoPrintISB.html
3be2dfc3d7fb2d16bc120690648761ff *html/pancan.clin.varnames.html
9be3ca9b4c3adb956d0bd80e9b6df56a *html/pancan_BQ.html
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c9996d9d6e06cc904a410888b7245825 *html/pancan_sampTypeMap.html
18388062a67a0152b33fc2fd4521e7dd *html/pancan_tabulate.html
3089e996b3128d417dc5a2a53ab20ae4 *html/patient_to_tumor_code.html
015545b182d37b5eac102a88c87931bd *html/pertClasses.html
c3347908276803f98570277e031ff813 *html/pert_70138.html
02b12c1547493cd8b168cda4b1797f97 *html/query_clue.html
6693c3bd307b008a254ac66a26f96bf0 *html/reexports.html
b3ace09f930c7eb293e646e492c7847f *html/replaceRownames.html
b795cf5baecb0d8174ec0004b03fff4c *html/small_msi.html
c873aeb7b7e490f75d57f68463c0172e *html/tumNorSet.html
b01c220fe83d130459b9495903e85873 *html/utils.html
d4625f5727b479152a3205f37b26e177 *html/viz_msi_raw.html
254e957812df34419038d0d8716166cc *mocks/NRAS_AHR.rda
6f146e3944b5a7ae2ac4e19d834ca496 *mocks/ccleNRAS.rda
81212ffde9b9b221badfe6351cf662a2 *mocks/nrasdf.rda
4b760e9c2b1b6161313cbf424ba1240c *pamphlets/bioccl.bib
ba62444a2f42ce25cc7d325e011b39eb *pamphlets/bioccl0518.Rmd
52df8b94522fb24e0b21d5b658a6d0fc *pamphlets/bioccl1018.Rmd
06957737de4e4f43c89228b67608105c *pamphlets/blcaMAE.rda
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3c5c686f0f72da3d4ecb4e62a773ba49 *pamphlets/pancode.png
148913ad335345962318942ab06db8d2 *pamphlets/panelCode.png
0cbb112fee74a1dc2e1c7656050d4b6b *scripts/do5utr_script.R
bb6f4fdeebb85ad9e6e9d034a4cd6377 *scripts/doCDS_script.R
9341d8301f7770f2d2643bc0a1e5d669 *scripts/msireg/exprByMSI_csv.R
5aad69bd2982e9eb530e1c3cee2d9725 *scripts/msireg/rbind_RDS_to_RDS.R
4a2c589b9bc35637ac8374787ec1f66a *scripts/msireg/rbind_csvs_to_RDS.R
7196cff540496e41331dbcc6b3db4fca *scripts/msireg/report_patients_by_txg.wdl
629aa13c70eeea2ec51a73957497843a *scripts/msireg/survey_tcga_tumors.wdl
