db57d9050954f8372443566665b68d6f *DESCRIPTION
4d34e9192892ea2c33815f7fbd1b6de9 *INDEX
6fee5407006cdbf611eab3e3df7acb97 *LICENSE
6e2849817b257c02b827608161655204 *Meta/Rd.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
ea47bc2570e22099bbf2a77eac358797 *Meta/hsearch.rds
389e6c0107c04b7f6278578e748a5525 *Meta/links.rds
44e91819d9b213af385d6e88c0d4f7b0 *Meta/nsInfo.rds
5600e60d362bc508b568a658e25268a0 *Meta/package.rds
6323a5129a83a6bfb9d0ded7f8a0fd90 *Meta/vignette.rds
ccb34bc49be65dade7bf567ea32337c8 *NAMESPACE
96bef70c515134fa6b6b61bc3261aec2 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/ALPS
c8f4f17f6e459dca28b86c1ffd8a022b *R/ALPS.rdb
fdcaaefe9e86cd1eb7a9ee9d9292ba31 *R/ALPS.rdx
5ab31d887f8e1b94e08e6e460d6b29c6 *doc/ALPS-vignette.R
7ea2d740bb8358702b8099c00bcfb3d8 *doc/ALPS-vignette.Rmd
af0ab44d5eecb090057e2d6ecc711e07 *doc/ALPS-vignette.html
12ed6bb24b412f5c5f504e303ec4fed9 *doc/index.html
c4cc703cd4402476fb4d0ab5a0082592 *extdata/bw/ACCx_025FE5F8_T1.bw
f7c2637e381c96a79e3b5c0b6dc4eb25 *extdata/bw/ACCx_025FE5F8_T2.bw
ef635b92ff09ebfa4393cc5053d32b34 *extdata/bw/ACCx_1.bed
ef635b92ff09ebfa4393cc5053d32b34 *extdata/bw/ACCx_2.bed
9314e8ce47fa6a45160df71422933311 *extdata/bw/ALPS_example_datatable.txt
ff1f3375ca7547ee83d5fd8e0b8f4c71 *extdata/bw/BRCA_000CFD9F_T2.bw
3328ce768cc212f5226d12f4dc864c93 *extdata/bw/BRCA_01112370_T1.bw
f4430a0b9dc7921ec2b09e1df648a301 *extdata/bw/BRCA_1.bed
f4430a0b9dc7921ec2b09e1df648a301 *extdata/bw/BRCA_2.bed
490f0c5d7f94dbd85ce4c37b8493b20a *extdata/bw/GBMx_09C0DCE7_T1.bw
cd15e4c493b7e66612136be4eca3923f *extdata/bw/GBMx_09C0DCE7_T2.bw
f5159bd7773e9d2082768b11b526f5da *extdata/bw/GBMx_1.bed
f5159bd7773e9d2082768b11b526f5da *extdata/bw/GBMx_2.bed
24ccd7429afecbf72e6c32625c608c02 *extdata/bw/LGGx_1.bed
a25476ecb2893ff7d5ce0e0115fcc422 *extdata/bw/LGGx_116B070A_T1.bw
cdf81dbc86f32abf4129f43cad4da50f *extdata/bw/LGGx_116B070A_T2.bw
24ccd7429afecbf72e6c32625c608c02 *extdata/bw/LGGx_2.bed
45bb10fb079caf5ba45b49183c0d77db *extdata/motifs/MA0147.2.jaspar
6591fa16fafac302ddb524e8e4096b66 *extdata/motifs/MA0147.2.meme
969f0989ce659d7a7474a73af0d97179 *extdata/motifs/MA0147.2.pfm
0c72893942d6efe6bab75e260413ce13 *extdata/motifs/MA0147.2.transfac
d68cf9b910d4a12a0729d8a0bae64b43 *extdata/motifs/cmyc.homer
7a1917605c787487c108177c94f8506b *extdata/overlap_violins/data_table_4_overlapviolins.txt
98aea2aba1fb3cc07fb309e5601e268d *extdata/overlap_violins/enrichemnts_4_overlapviolins.txt
805508500e2445e830116317946ce0d2 *figures/README-ALPS-overview.png
1369dfd7c3b88b6dc622969f6b12876c *help/ALPS.rdb
3bdbad132aef3d6f90bf6d3e526d3118 *help/ALPS.rdx
51b2df6a0bc39bfe2f9459e55bec5af1 *help/AnIndex
48324d53f3563c0dc99388448e62db83 *help/aliases.rds
b1a2136a6815e25b7efdd5ac837ac399 *help/paths.rds
8367f7752772403ce849d8ddea2e73db *html/00Index.html
c8f5e0989a3c204407785f0766ad3a35 *html/ALPS-package.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
f071a9e22662c181452636b812527ef7 *html/get_genomic_annotations.html
2728f482ddc98e0b1613f7078e80d5ef *html/get_variable_regions.html
753c742189117b9e1ceea8172b52dbfa *html/merge_GR.html
fcaf5ecc63d5dfef54167d0d7be3b218 *html/multiBigwig_summary.html
8902b1d8132a42d3be9dbcc11ad3a03a *html/pipe.html
e46dccd173fcaf174d91d15ec61b8418 *html/plot_browser_tracks.html
323bea84a1ad617f7c832e8c20f5b003 *html/plot_correlation.html
f7f4942f6bc8d170809d11a0953562df *html/plot_enrichments.html
937912f3a97e4a7b46348df6d25cc153 *html/plot_genomic_annotations.html
e797c1f30059c72a4319e06b77677c26 *html/plot_motif_logo.html
d8ecdae05b31448e031d837375ca3c18 *html/process_homer.html
3f62b108ff7a36aec187b4b4a1bfb2c5 *html/process_jaspar.html
200cc0f6d3fede25bfd3a660cd3dbe79 *html/process_meme.html
f06f794d8ef74152e8e102102f936c53 *html/process_pfm.html
eb3333c74ca229843a0603c2c2fbfcf5 *html/process_transfac.html
17c22bfaec515572ffe80e4a74e0a479 *script/DATASET.R
