normMethod {ABSSeq} | R Documentation

## Accessors for the 'normMethod' slot of a ABSDataSet object.

### Description

Accessor functions for the 'normMethod' information in a ABSDataSet object.

### Usage

    ## S4 method for signature 'ABSDataSet'
    normMethod(object)

    ## S4 replacement method for signature 'ABSDataSet,character'
    normMethod(object)<-value

### Arguments

`object` | an `ABSDataSet` object.
`value` | a character object, should be one of 'user', 'qtoatl', 'total', 'quartile' and 'geometric'. See `normalFactors`

### Details

The 'normMethod' is the method for calculating the size factors. Currently, Four methods: 'user', 'qtoatl', 'total', 'quartile' and 'DESeq' are available.

### Examples

    data(simuN5)
    obj <- ABSDataSet(counts=simuN5$counts, groups=factor(simuN5$groups))
    normMethod(obj)
    normMethod(obj) <- "geometric"
    normMethod(obj)

[Package ABSSeq version 1.42.0 Index]