excounts {ABSSeq} | R Documentation

## Accessors for the 'excounts' slot of a ABSDataSet object.

### Description

Accessors for the 'excounts' slot of a ABSDataSet object, return a matrix

### Usage

    ## S4 replacement method for signature 'ABSDataSet,matrix'
    excounts(object)<-value

### Arguments

`object` | a `ABSDataSet` object.
`value` | an numeric matrix

### Details

The excounts slot holds the nomarlized (trimmed or not) count data as a matrix of non-negative integer count values, rows and columns for genes and samples, respectively.

### See Also

`ABSDataSet`, `ReplaceOutliersByMAD`

### Examples

    data(simuN5)
    obj <- ABSDataSet(counts=simuN5$counts, groups=factor(simuN5$groups))
    obj <- normalFactors(obj)
    obj <- ReplaceOutliersByMAD(obj)
    head(excounts(obj))

[Package ABSSeq version 1.42.0 Index]