# Strength of Selected Codon Usage

## Documentation for package ‘sscu’ version 2.17.0

- DESCRIPTION file.
- Package NEWS.

## Help Pages

sscu-package | Strength of Selected Codon Usage
akashi_test | akashi test for codon usage
genomic_gc3 | genomic gc3 for an multifasta genomic file
low_frequency_op | the function identify low frequency optimal codons
optimal_codons | Identify optimal codons by using the highly expressed genes method
optimal_codons_table | statistics for the optimal codons
optimal_codon_statistics | statistics for the optimal codons
op_corre_CodonW | Identify optimal codons by using the correlative method from Hershberg & Petrov, the input file is from CodonW
op_corre_NCprime | Identify optimal codons by using the correlative method from Hershberg & Petrov, the input file is from NCprime
op_highly | Identify optimal codons by using the highly expressed genes method
op_highly_stats | statistics for the optimal codons
selected_codons | Identify optimal codons by using the highly expressed genes method
s_index | S index (Strength of Selected Codon Usage)