# GEMINI: Variational inference approach to infer genetic interactions from pairwise CRISPR screens

## Documentation for package ‘gemini’ version 1.1.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

%<>% | Compound pipe
%>% | Pipe
.median_normalize | Median normalization
counts | Big Papi counts matrix
gemini_boxplot | gemini_boxplot
gemini_calculate_lfc | Calculate log-fold change
gemini_create_input | gemini_create_input
gemini_inference | gemini_inference
gemini_initialize | gemini_initialize
gemini_parallelization | Parallelization in GEMINI
gemini_plot_mae | MAE plot
gemini_prepare_input | Prepare input before Model creation
gemini_score | Scoring Combination Effect
guide.annotation | Big Papi guide annotations
initialize_s | initialize_s
initialize_tau | initialize_tau
initialize_x | intialize_x
initialize_y | initialize_y
Input | Input object from Big Papi
Model | Model object from Big Papi
sample.replicate.annotation | Big Papi sample and replicate annotations
Sgene2Pguides_hash | Gene hashing
Sguide2Pguides_hash | Guide hashing
update_mae | update_mae
update_s_pb | update_s
update_tau_pb | update_tau_pb
update_x_pb | update_x_p
update_y_pb | update_y_pb