# GC Aware Peak Caller

## Documentation for package ‘gcapc’ version 1.11.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

bindWidth | ChIP-seq Binding Width And Peak Window Size Estimation
gcapcPeaks | GC Effects Aware Peak Calling
gcEffects | ChIP-seq GC Effects Estimation
peaksCAT | CATplot of Peaks
read5endCoverage | Reads Coverage Using 5-end Base
refinePeaks | Refine Peaks with GC Effects
refineSites | Adjust ChIP-seq Read Count Table