Package: circRNAprofiler
Type: Package
Title: circRNAprofiler: An R-Based Computational Framework for the
        Downstream Analysis of Circular RNAs
Version: 1.1.0
Author: Simona Aufiero
Maintainer: Simona Aufiero <simo.aufiero@gmail.com>
Description: R-based computational framework for a comprehensive in silico 
    analysis of circRNAs. This computational framework allows to combine and 
    analyze circRNAs previously detected by multiple publicly available 
    annotation-based circRNA detection tools. It covers different aspects of 
    circRNAs analysis from differential expression analysis, evolutionary 
    conservation, biogenesis to functional analysis.
License: GPL-3
Encoding: UTF-8
biocViews: Annotation, StructuralPrediction, FunctionalPrediction,
        GenePrediction, GenomeAssembly, DifferentialExpression
Depends: R(>= 3.6.0), gwascat
RoxygenNote: 6.1.1
Suggests: testthat, knitr, roxygen2, rmarkdown, citr, devtools,
        gridExtra, ggpubr, VennDiagram, BSgenome.Mmusculus.UCSC.mm9,
        BSgenome.Hsapiens.UCSC.hg38, BSgenome.Mmusculus.UCSC.mm10,
Imports: dplyr, magrittr, readr, rtracklayer, stringr, Biostrings,
        BSgenome, stringi, DESeq2, edgeR, GenomicRanges, IRanges,
        seqinr, R.utils, reshape2, ggplot2, utils, rlang, S4Vectors,
        stats, AnnotationHub, GenomeInfoDb,
        BSgenome.Hsapiens.UCSC.hg19,
VignetteBuilder: knitr
URL: https://github.com/Aufiero/circRNAprofiler
BugReports: https://github.com/Aufiero/circRNAprofiler/issues
git_url: https://git.bioconductor.org/packages/circRNAprofiler
git_branch: master
git_last_commit: 1c0450a
git_last_commit_date: 2019-10-29
Date/Publication: 2019-11-06
NeedsCompilation: no
Packaged: 2019-11-07 06:06:55 UTC; biocbuild
Built: R 4.0.0; ; 2019-11-07 14:12:02 UTC; unix
