StructuralVariantAnnotation-package	StructuralVariantAnnotation
%na%	grapes-na-grapes
%null%	grapes-null-grapes
.breakpointRanges	breakpointRanges
.constrict	dot-constrict
.isSymbolic	dot-isSymbolic
.pairwiseLCPrefix	dot-pairwiseLCPrefix
.svLen	dot-svLen
.testfile	dot-testfile
.testrecord	dot-testrecord
.toVcfBreakendNotationAlt	dot-toVcfBreakendNotationAlt
.unXStringSet	dot-unXStringSet
align_breakpoints	align_breakpoints
breakendRanges	breakendRanges
breakendRanges,VCF-method	breakendRanges
breakpointgr2bedpe	breakpointgr2bedpe
breakpointgr2pairs	pairs2breakpointgr
breakpointGRangesToVCF	breakpointGRangesToVCF
breakpointRanges	breakpointRanges
breakpointRanges,VCF-method	breakpointRanges
calculateReferenceHomology	calculateReferenceHomology
countBreakpointOverlaps	countBreakpointOverlaps
elementExtract	elementExtract
extractBreakpointSequence	extractBreakpointSequence
extractReferenceSequence	extractReferenceSequence
findBreakpointOverlaps	findBreakpointOverlaps
isStructural	isStructural
isStructural,CollapsedVCF-method	isStructural
isStructural,ExpandedVCF-method	isStructural
isStructural,VCF-method	isStructural
isSymbolic	isSymbolic
isSymbolic,CollapsedVCF-method	isSymbolic
isSymbolic,ExpandedVCF-method	isSymbolic
pairs2breakpointgr	pairs2breakpointgr
partner	partner
StructuralVariantAnnotation	StructuralVariantAnnotation
