Package: SpidermiR
Type: Package
Title: SpidermiR: An R/Bioconductor package for integrative network
        analysis with miRNA data
Version: 1.17.2
Date: 01-09-2020
Author: Claudia Cava,
    Antonio Colaprico,
    Alex Graudenzi,
    Gloria Bertoli,
	Tiago C. Silva,
	Catharina Olsen,
	Houtan Noushmehr,
    Gianluca Bontempi,
    Giancarlo Mauri,
    Isabella Castiglioni
Maintainer: Claudia Cava <claudia.cava@ibfm.cnr.it>
Depends: R (>= 3.0.0)
Imports: httr, igraph, utils, stats, miRNAtap, miRNAtap.db,
        AnnotationDbi, org.Hs.eg.db, ggplot2, gridExtra, gplots,
        grDevices, lattice, latticeExtra, visNetwork, TCGAbiolinks,
        gdata, MAGeCKFlute,networkD3
Description: The aims of SpidermiR are : i) facilitate the network open-access
    data retrieval from GeneMania data, ii) prepare the data using the appropriate gene nomenclature,
    iii) integration of miRNA data in a specific network, iv) provide different
    standard analyses and v) allow the user to visualize the results. In more
    detail, the package provides multiple methods for query, prepare and download
    network data (GeneMania), and the integration with  validated and predicted miRNA data (mirWalk, miRTarBase, miRandola, Miranda, PicTar and TargetScan). Furthermore, we also present a statistical test to identify pharmaco-mir relationships using the gene-drug interactions derived
	 by DGIdb and MATADOR database.
License: GPL (>= 3)
biocViews: GeneRegulation, miRNA, Network
Suggests: BiocStyle, knitr, rmarkdown, testthat, devtools, roxygen2
VignetteBuilder: knitr
LazyData: true
URL: https://github.com/claudiacava/SpidermiR
BugReports: https://github.com/claudiacava/SpidermiR/issues
RoxygenNote: 7.0.2
NeedsCompilation: no
Packaged: 2020-01-14 03:30:53 UTC; biocbuild
git_url: https://git.bioconductor.org/packages/SpidermiR
git_branch: master
git_last_commit: 64ccba8
git_last_commit_date: 2020-01-13
Date/Publication: 2020-01-13
Built: R 4.0.0; ; 2020-01-14 16:42:57 UTC; unix
