Package: SeqVarTools
Version: 1.25.0
Type: Package
Title: Tools for variant data
Description: An interface to the fast-access storage format for VCF
        data provided in SeqArray, with tools for common operations and
        analysis.
Author: Stephanie M. Gogarten, Xiuwen Zheng, Adrienne Stilp
Maintainer: Stephanie M. Gogarten <sdmorris@uw.edu>
Depends: SeqArray
Imports: grDevices, graphics, stats, methods, Biobase, gdsfmt,
        GenomicRanges, IRanges, S4Vectors, GWASExactHW, logistf,
        Matrix, dplyr, rlang, tidyr
Suggests: BiocGenerics, BiocStyle, RUnit, stringr
License: GPL-3
URL: https://github.com/smgogarten/SeqVarTools
LazyData: yes
biocViews: SNP, GeneticVariability, Sequencing, Genetics
Collate: AllClasses.R AllGenerics.R AllUtilities.R
        Methods-SeqVarGDSClass.R Methods-SeqVarData.R
        Methods-Iterator.R chromWithPAR.R duplicateDiscordance.R hwe.R
        inbreedCoeff.R mendelErr.R pca.R setVariantID.R
        alternateAlleleDetection.R refFrac.R regression.R
git_url: https://git.bioconductor.org/packages/SeqVarTools
git_branch: master
git_last_commit: a952bd0
git_last_commit_date: 2019-10-29
Date/Publication: 2019-11-06
NeedsCompilation: no
Packaged: 2019-11-07 02:59:09 UTC; biocbuild
Built: R 4.0.0; ; 2019-11-07 15:15:30 UTC; unix
