Package: GeneGeneInteR
Type: Package
Title: Tools for Testing Gene-Gene Interaction at the Gene Level
Version: 1.13.0
Author: Mathieu Emily, Nicolas Sounac, Florian Kroell, Magalie Houee-Bigot
Maintainer: Mathieu Emily <mathieu.emily@agrocampus-ouest.fr>, Magalie Houee-Bigot <magalie.houee@agrocampus-ouest.fr>
Description: The aim of this package is to propose several methods for testing gene-gene interaction in case-control association studies. Such a test can be done by aggregating SNP-SNP interaction tests performed at the SNP level (SSI) or by using gene-gene multidimensionnal methods (GGI) methods. The package also proposes tools for a graphic display of the results.
License: GPL (>= 2)
LazyData: TRUE
Depends: R (>= 3.5)
biocViews: GenomeWideAssociation, SNP, Genetics, GeneticVariability
Imports: snpStats, mvtnorm, GGtools, Rsamtools, igraph, kernlab,
        FactoMineR, plspm, IRanges, GenomicRanges,
        data.table,grDevices, graphics,stats, utils, methods
git_url: https://git.bioconductor.org/packages/GeneGeneInteR
git_branch: master
git_last_commit: efa3d54
git_last_commit_date: 2019-10-29
Date/Publication: 2019-11-06
NeedsCompilation: yes
Packaged: 2019-11-07 04:26:33 UTC; biocbuild
Built: R 4.0.0; x86_64-apple-darwin15.6.0; 2019-11-07 14:29:46 UTC; unix
