adaptSpillmat	adaptSpillmat
adaptSpillmat,matrix,vector-method	adaptSpillmat
applyCutoffs	applyCutoffs
applyCutoffs,dbFrame-method	applyCutoffs
assignPrelim	assignPrelim
assignPrelim,character,data.frame-method	assignPrelim
assignPrelim,character,vector-method	assignPrelim
assignPrelim,flowFrame,data.frame-method	assignPrelim
assignPrelim,flowFrame,vector-method	assignPrelim
bc_ids	dbFrame-methods
bc_ids,dbFrame-method	dbFrame-methods
bc_key	dbFrame-methods
bc_key,dbFrame-method	dbFrame-methods
cluster	cluster
cluster_codes	SCE-utils
cluster_codes,SingleCellExperiment-method	SCE-utils
cluster_ids	SCE-utils
cluster_ids,SingleCellExperiment,character-method	SCE-utils
cluster_ids,SingleCellExperiment,missing-method	SCE-utils
compCytof	compCytof
compCytof,ANY,data.frame-method	compCytof
compCytof,character,matrix-method	compCytof
compCytof,flowFrame,matrix-method	compCytof
compCytof,flowSet,ANY-method	compCytof
computeSpillmat	computeSpillmat
computeSpillmat,dbFrame-method	computeSpillmat
concatFCS	concatFCS
concatFCS,character-method	concatFCS
concatFCS,flowSet-method	concatFCS
concatFCS,list-method	concatFCS
counts	dbFrame-methods
counts,dbFrame-method	dbFrame-methods
daFrame-class	daFrame-class
data	data
dbFrame	dbFrame-class
dbFrame-class	dbFrame-class
dbFrame-methods	dbFrame-methods
deltas	dbFrame-methods
deltas,dbFrame-method	dbFrame-methods
ei	SCE-utils
ei,SingleCellExperiment-method	SCE-utils
estCutoffs	estCutoffs
estCutoffs,dbFrame-method	estCutoffs
exprs	SCE-utils
exprs,dbFrame-method	dbFrame-methods
extractClusters	extractClusters
filterSCE	filterSCE
guessPanel	guessPanel
guessPanel,flowFrame-method	guessPanel
guessPanel,flowSet-method	guessPanel
isotope_list	data
launchGUI	launchGUI
marker_classes	SCE-utils
marker_classes,SingleCellExperiment-method	SCE-utils
mergeClusters	mergeClusters
merging_table	data
mhl_cutoff	dbFrame-methods
mhl_cutoff,dbFrame-method	dbFrame-methods
mhl_cutoff<-	dbFrame-methods
mhl_cutoff<-,dbFrame,ANY-method	dbFrame-methods
mhl_cutoff<-,dbFrame,numeric-method	dbFrame-methods
mhl_dists	dbFrame-methods
mhl_dists,dbFrame-method	dbFrame-methods
mp_cells	data
normCytof	normCytof
normCytof,character-method	normCytof
normCytof,flowFrame-method	normCytof
normed_bcs	dbFrame-methods
normed_bcs,dbFrame-method	dbFrame-methods
n_cells	SCE-utils
n_cells,SingleCellExperiment-method	SCE-utils
outFCS	outFCS
outFCS,dbFrame,flowFrame-method	outFCS
outFrames	outFrames
outFrames,dbFrame-method	outFrames
PBMC_fs	data
PBMC_md	data
PBMC_panel	data
plotAbundances	plotAbundances
plotClusterExprs	plotClusterExprs
plotClusterHeatmap	plotClusterHeatmap
plotCodes	plotCodes
plotCounts	plotCounts
plotDiffHeatmap	plotDiffHeatmap
plotDR	plotDR
plotEvents	plotEvents
plotEvents,dbFrame-method	plotEvents
plotExprHeatmap	plotExprHeatmap
plotExprs	plotExprs
plotMahal	plotMahal
plotMahal,dbFrame-method	plotMahal
plotMDS	plotMDS
plotMedExprs	plotMedExprs
plotNRS	plotNRS
plotSpillmat	plotSpillmat
plotSpillmat,ANY,data.frame-method	plotSpillmat
plotSpillmat,character,ANY-method	plotSpillmat
plotSpillmat,numeric,matrix-method	plotSpillmat
plotYields	plotYields
plotYields,dbFrame-method	plotYields
prepData	prepData
raw_data	data
runDR	runDR
sample_ff	data
sample_ids	SCE-utils
sample_ids,SingleCellExperiment-method	SCE-utils
sample_key	data
sep_cutoffs	dbFrame-methods
sep_cutoffs,dbFrame-method	dbFrame-methods
sep_cutoffs<-	dbFrame-methods
sep_cutoffs<-,dbFrame,ANY-method	dbFrame-methods
sep_cutoffs<-,dbFrame,numeric-method	dbFrame-methods
ss_exp	data
state_markers	SCE-utils
state_markers,SingleCellExperiment-method	SCE-utils
type_markers	SCE-utils
type_markers,SingleCellExperiment-method	SCE-utils
yields	dbFrame-methods
yields,dbFrame-method	dbFrame-methods
