Package: Biostrings
Title: Efficient manipulation of biological strings
Description: Memory efficient string containers, string matching
	algorithms, and other utilities, for fast manipulation of large
	biological sequences or sets of sequences.
Version: 2.55.4
Encoding: UTF-8
Author: H. Pagès, P. Aboyoun, R. Gentleman, and S. DebRoy
Maintainer: H. Pagès <hpages@fredhutch.org>
biocViews: SequenceMatching, Alignment, Sequencing, Genetics,
        DataImport, DataRepresentation, Infrastructure
Depends: R (>= 3.5.0), methods, BiocGenerics (>= 0.31.5), S4Vectors (>=
        0.21.13), IRanges, XVector (>= 0.23.2)
Imports: methods, utils, grDevices, graphics, stats, crayon
LinkingTo: S4Vectors, IRanges, XVector
Enhances: Rmpi
Suggests: BSgenome (>= 1.13.14), BSgenome.Celegans.UCSC.ce2 (>=
        1.3.11), BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.11),
        BSgenome.Hsapiens.UCSC.hg18, drosophila2probe, hgu95av2probe,
        hgu133aprobe, GenomicFeatures (>= 1.3.14), hgu95av2cdf, affy
        (>= 1.41.3), affydata (>= 1.11.5), RUnit
License: Artistic-2.0
LazyLoad: yes
Collate: 00datacache.R utils.R IUPAC_CODE_MAP.R AMINO_ACID_CODE.R
        GENETIC_CODE.R XStringCodec-class.R seqtype.R add_colors.R
        XString-class.R XStringSet-class.R XStringSet-comparison.R
        XStringViews-class.R MaskedXString-class.R
        XStringSetList-class.R xscat.R XStringSet-io.R letter.R
        getSeq.R letterFrequency.R dinucleotideFrequencyTest.R chartr.R
        reverseComplement.R translate.R toComplex.R replaceAt.R
        replaceLetterAt.R injectHardMask.R padAndClip.R
        strsplit-methods.R misc.R SparseList-class.R MIndex-class.R
        lowlevel-matching.R match-utils.R matchPattern.R maskMotif.R
        matchLRPatterns.R trimLRPatterns.R matchProbePair.R matchPWM.R
        findPalindromes.R PDict-class.R matchPDict.R
        XStringPartialMatches-class.R XStringQuality-class.R
        QualityScaledXStringSet.R InDel-class.R
        AlignedXStringSet-class.R PairwiseAlignments-class.R
        PairwiseAlignmentsSingleSubject-class.R PairwiseAlignments-io.R
        align-utils.R pmatchPattern.R pairwiseAlignment.R stringDist.R
        needwunsQS.R MultipleAlignment.R matchprobes.R zzz.R
git_url: https://git.bioconductor.org/packages/Biostrings
git_branch: master
git_last_commit: f4ae609
git_last_commit_date: 2019-12-14
Date/Publication: 2019-12-14
NeedsCompilation: yes
Packaged: 2019-12-15 00:40:18 UTC; biocbuild
Built: R 4.0.0; x86_64-apple-darwin15.6.0; 2019-12-15 12:20:49 UTC; unix
