# Hyper Enrichment

## Documentation for package ‘hypeR’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

enrichr_available | Get enrichr available genesets
enrichr_download | Download data from enrichr in the form of a named list
enrichr_gsets | Download data from enrichr in the form of a gsets object
ggempty | An empty ggplot
ggeplot | Enrichment plot implemented in ggplot
ggvenn | Venn diagram implemented in ggplot
gsets | A genesets object
hyp | A hyp object
hypeR | Calculate enrichment of one or more signatures
hyperdb_info | Print hypeR-db rgsets information
hyperdb_rgsets | Download data from hyperdb in the form of a rgsets object
hyp_dots | Visualize hyp/multihyp objects as a dots plot
hyp_emap | Visualize hyp/multihyp objects as an enrichment map
hyp_hmap | Visualize hyp/multihyp objects as a hiearchy map
hyp_show | Convert a hyp object to a reactable table
hyp_to_excel | Export hyp/multihyp object to excel
hyp_to_rmd | Export hyp object to rmarkdown
hyp_to_table | Export hyp/multihyp object to table
msigdb_available | Get msigdbr available genesets
msigdb_download | Download data from msigdb in the form of a named list
msigdb_gsets | Download data from msigdb in the form of a gsets object
msigdb_info | Print msigdb gsets information
msigdb_species | Get msigdbr available species
msigdb_version | Get msigdbr package version number
multihyp | A multihyp object
pvector | A push/pop capable vector
rgsets | A relational genesets object