# Generate QC Reports For Alevin Output

## Documentation for package ‘alevinQC’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

alevinQC-pkg | alevinQC
alevinQCReport | Generate alevin summary report
alevinQCShiny | Generate alevin summary shiny app
checkAlevinInputFiles | Check that all required input files are available
plotAlevinBarcodeCollapse | Summary plot of cell barcode collapsing
plotAlevinKneeNbrGenes | Knee plot of the number of detected genes per cell
plotAlevinKneeRaw | Knee plot of raw cell barcode frequencies
plotAlevinQuant | Panel of plots with quantification summary statistics
plotAlevinQuantPairs | Pairs plot with quantification summary statistics
readAlevinQC | Read alevin data required to generate summary report