Package: AneuFinder
Type: Package
Title: Analysis of Copy Number Variation in Single-Cell-Sequencing Data
Version: 1.16.0
Author: Aaron Taudt, Bjorn Bakker, David Porubsky
Maintainer: Aaron Taudt <aaron.taudt@gmail.com>
Description: AneuFinder implements functions for copy-number detection,
    breakpoint detection, and karyotype and heterogeneity analysis in
    single-cell whole genome sequencing and strand-seq data.
Depends: R (>= 3.5), GenomicRanges, ggplot2, cowplot, AneuFinderData
Imports: methods, utils, grDevices, graphics, stats, foreach,
        doParallel, BiocGenerics (>= 0.31.6), S4Vectors, GenomeInfoDb,
        IRanges, Rsamtools, bamsignals, DNAcopy, ecp, Biostrings,
        GenomicAlignments, reshape2, ggdendro, ggrepel, ReorderCluster,
        mclust
Suggests: knitr, BiocStyle, testthat, BSgenome.Hsapiens.UCSC.hg19,
        BSgenome.Mmusculus.UCSC.mm10
License: Artistic-2.0
LazyLoad: yes
VignetteBuilder: knitr
Packaged: 2020-04-28 02:19:04 UTC; biocbuild
biocViews: ImmunoOncology, Software, Sequencing, SingleCell,
        CopyNumberVariation, GenomicVariation, HiddenMarkovModel,
        WholeGenome
URL: https://github.com/ataudt/aneufinder.git
RoxygenNote: 6.0.1
git_url: https://git.bioconductor.org/packages/AneuFinder
git_branch: RELEASE_3_11
git_last_commit: ba2e82e
git_last_commit_date: 2020-04-27
Date/Publication: 2020-04-27
NeedsCompilation: yes
Built: R 4.0.0; x86_64-apple-darwin17.0; 2020-04-28 13:38:36 UTC; unix
