R: Import universalmotif formatted motifs.

read_motifs {universalmotif}

R Documentation

Import universalmotif formatted motifs.

Description

Import motifs created from write_motifs(). For optimal storage of universalmotif class motifs, consider using saveRDS() and readRDS(). Currently the universalmotif format is YAML-based.

Usage

read_motifs(file, skip = 0, progress = FALSE, BP = FALSE)

Arguments

`file`	`character(1)` File name.
`skip`	`numeric(1)` If not zero, will skip however many desired lines in the file before starting to read.
`progress`	`logical(1)` Show progress.
`BP`	`logical(1)` Allows for the use of BiocParallel within `read_motifs()`. See `BiocParallel::register()` to change the default backend.

Value

list universalmotif objects.

Author(s)