Import CIS-BP motifs.

Description

Import CIS-BP formatted motifs. See http://cisbp.ccbr.utoronto.ca/index.php. Assumed to be DNA motifs.

Usage

read_cisbp(file, skip = 0)

Arguments

Value

list universalmotif objects.

Author(s)

Benjamin Jean-Marie Tremblay, b2tremblay@uwaterloo.ca

References

Weirauch M, Yang A, Albu M, Cote A, Montenegro-Montero A, Drewe P, Najafabadi H, Lambert S, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano J, Galli M, Lewsey M, Huang E, Mukherjee T, Chen X, Reece-Hoyes J, Govindarajan S, Shaulsky G, Walhout A, Bouget F, Ratsch G, Larrondo L, Ecker J, Hughes T (2014). “Determination and inference of eukaryotic transcription factor sequence specificity.” Cell, 158, 1431-1443.

See Also

Other read_motifs: read_homer, read_jaspar, read_matrix, read_meme, read_motifs, read_transfac, read_uniprobe

Examples

cisbp <- read_cisbp(system.file("extdata", "cisbp.txt",
                                package = "universalmotif"))