motif.hg19.CTCF {sevenC} | R Documentation

## CTCF motif locations in human genome hg19.

### Description

A dataset containing the motif hits of the CTCF recognition motif from JASPAR database (MA0139.1, http://jaspar.genereg.net/matrix/MA0139.1/) in human genome assembly hg19.

### Usage

    motif.hg19.CTCF

### Format

`GRanges` object with 38774 ranges on positive and negative strand with 1 meta column:

score

  The significance socre of the motif hit, defined as -log_10(p-value).

### Details

The dataset was downloaded from JASPAR 2018 motif tracks from the following URL: http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2018/hg19/tsv/MA0139.1.tsv.gz

Motif locations were filtered to contain only motif hists with p-value ≤ 2.5 * 10^-6. The p-value is the motif hit significance as repoted from the motif scanning alogrithim used during construction of the JASPAR motif tracks. More information on the JASPAR motif track pipeline can be found here: https://github.com/wassermanlab/JASPAR-UCSC-tracks.

### Source

http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2018/hg19/tsv/MA0139.1.tsv.gz

[Package sevenC version 1.6.0 Index]