SignalSet class

Description

SignalSet class

Usage

SignalSet

Format

An R6Class object.

Value

Object of class SignalSet

Fields

platform

platform name, supports "EPIC", "HM450" and "HM27"

IG

intensity table for type I probes in green channel

IR

intensity table for type I probes in red channel

II

intensity table for type II probes

oobG

out-of-band probes in green channel

oobR

out-of-band probes in red channel

ctl

all the control probe intensities

pval

named numeric vector of p-values

mask

probe mask

Documentation

For full documentation of each method go to

new(platform)

Create a SignalSet in the specified platform

detectPValue()

Detect P-value for each probe

toM()

Convert to M values

totalIntensities()

Total intensity on each probe

Examples

SignalSet$new("EPIC")