# Generated by roxygen2: do not edit by hand

export(DM)
export(bootstrapCluster)
export(buildKNNGraph)
export(buildSNNGraph)
export(calculateSumFactors)
export(cleanSizeFactors)
export(clusterModularity)
export(combineCV2)
export(combineMarkers)
export(combinePValues)
export(combineVar)
export(computeSpikeFactors)
export(computeSumFactors)
export(convertTo)
export(correlateGenes)
export(correlateNull)
export(correlatePairs)
export(cyclone)
export(decomposeVar)
export(denoisePCA)
export(denoisePCANumber)
export(doubletCells)
export(doubletCluster)
export(findMarkers)
export(fitTrendCV2)
export(fitTrendPoisson)
export(fitTrendVar)
export(getClusteredPCs)
export(getDenoisedPCs)
export(getTopHVGs)
export(getTopMarkers)
export(improvedCV2)
export(makeTechTrend)
export(modelGeneCV2)
export(modelGeneCV2WithSpikes)
export(modelGeneVar)
export(modelGeneVarByPoisson)
export(modelGeneVarWithSpikes)
export(multiBlockNorm)
export(multiBlockVar)
export(neighborsToKNNGraph)
export(neighborsToSNNGraph)
export(overlapExprs)
export(pairwiseBinom)
export(pairwiseTTests)
export(pairwiseWilcox)
export(parallelPCA)
export(quickCluster)
export(quickSubCluster)
export(sandbag)
export(scaledColRanks)
export(technicalCV2)
export(testVar)
export(trendVar)
exportMethods(buildKNNGraph)
exportMethods(buildSNNGraph)
exportMethods(calculateSumFactors)
exportMethods(correlatePairs)
exportMethods(cyclone)
exportMethods(decomposeVar)
exportMethods(doubletCells)
exportMethods(doubletCluster)
exportMethods(findMarkers)
exportMethods(getDenoisedPCs)
exportMethods(improvedCV2)
exportMethods(modelGeneCV2)
exportMethods(modelGeneCV2WithSpikes)
exportMethods(modelGeneVar)
exportMethods(modelGeneVarByPoisson)
exportMethods(modelGeneVarWithSpikes)
exportMethods(overlapExprs)
exportMethods(parallelPCA)
exportMethods(quickCluster)
exportMethods(quickSubCluster)
exportMethods(sandbag)
exportMethods(technicalCV2)
exportMethods(trendVar)
import(SingleCellExperiment)
import(methods)
importClassesFrom(Matrix,dgCMatrix)
importClassesFrom(S4Vectors,DataFrame)
importClassesFrom(S4Vectors,List)
importClassesFrom(S4Vectors,SimpleList)
importFrom(BiocGenerics,"sizeFactors<-")
importFrom(BiocGenerics,as.data.frame)
importFrom(BiocGenerics,cbind)
importFrom(BiocGenerics,counts)
importFrom(BiocGenerics,normalize)
importFrom(BiocGenerics,sizeFactors)
importFrom(BiocNeighbors,KmknnParam)
importFrom(BiocNeighbors,buildIndex)
importFrom(BiocNeighbors,findKNN)
importFrom(BiocNeighbors,findNeighbors)
importFrom(BiocNeighbors,queryKNN)
importFrom(BiocNeighbors,queryNeighbors)
importFrom(BiocParallel,SerialParam)
importFrom(BiocParallel,bpisup)
importFrom(BiocParallel,bplapply)
importFrom(BiocParallel,bpmapply)
importFrom(BiocParallel,bpnworkers)
importFrom(BiocParallel,bpstart)
importFrom(BiocParallel,bpstop)
importFrom(BiocSingular,DeferredMatrix)
importFrom(BiocSingular,ExactParam)
importFrom(BiocSingular,bsdeferred)
importFrom(BiocSingular,bsparam)
importFrom(BiocSingular,runSVD)
importFrom(DelayedArray,DelayedArray)
importFrom(DelayedArray,rowMins)
importFrom(DelayedMatrixStats,colSums2)
importFrom(DelayedMatrixStats,rowMeans2)
importFrom(DelayedMatrixStats,rowQuantiles)
importFrom(DelayedMatrixStats,rowRanks)
importFrom(DelayedMatrixStats,rowVars)
importFrom(Matrix,"diag<-")
importFrom(Matrix,colMeans)
importFrom(Matrix,colSums)
importFrom(Matrix,crossprod)
importFrom(Matrix,diag)
importFrom(Matrix,qr)
importFrom(Matrix,qr.coef)
importFrom(Matrix,rowMeans)
importFrom(Matrix,sparseMatrix)
importFrom(Matrix,t)
importFrom(Matrix,which)
importFrom(Rcpp,sourceCpp)
importFrom(S4Vectors,"mcols<-")
importFrom(S4Vectors,"metadata<-")
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,List)
importFrom(S4Vectors,SimpleList)
importFrom(S4Vectors,metadata)
importFrom(SingleCellExperiment,"reducedDim<-")
importFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(SingleCellExperiment,altExp)
importFrom(SingleCellExperiment,isSpike)
importFrom(SingleCellExperiment,logcounts)
importFrom(SingleCellExperiment,reducedDim)
importFrom(SingleCellExperiment,sizeFactorNames)
importFrom(SingleCellExperiment,spikeNames)
importFrom(SummarizedExperiment,"assay<-")
importFrom(SummarizedExperiment,"rowData<-")
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(dqrng,generateSeedVectors)
importFrom(edgeR,"[.DGEList")
importFrom(edgeR,DGEList)
importFrom(edgeR,scaleOffset.DGEList)
importFrom(igraph,"E<-")
importFrom(igraph,E)
importFrom(igraph,cluster_walktrap)
importFrom(igraph,is.directed)
importFrom(igraph,make_graph)
importFrom(igraph,modularity)
importFrom(igraph,simplify)
importFrom(limma,contrasts.fit)
importFrom(limma,fitFDistRobustly)
importFrom(limma,lmFit)
importFrom(limma,weighted.median)
importFrom(limma,weightedLowess)
importFrom(methods,as)
importFrom(methods,is)
importFrom(methods,selectMethod)
importFrom(scater,calculateAverage)
importFrom(scater,librarySizeFactors)
importFrom(scater,logNormCounts)
importFrom(scater,nexprs)
importFrom(scater,normalize)
importFrom(scater,normalizeCounts)
importFrom(statmod,glmgam.fit)
importFrom(stats,approx)
importFrom(stats,approxfun)
importFrom(stats,ave)
importFrom(stats,coef)
importFrom(stats,coefficients)
importFrom(stats,density)
importFrom(stats,dist)
importFrom(stats,fitted)
importFrom(stats,hclust)
importFrom(stats,lm)
importFrom(stats,loess)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,nls)
importFrom(stats,nls.control)
importFrom(stats,p.adjust)
importFrom(stats,pbinom)
importFrom(stats,pchisq)
importFrom(stats,pf)
importFrom(stats,pnorm)
importFrom(stats,predict)
importFrom(stats,pt)
importFrom(stats,qnorm)
importFrom(stats,quantile)
importFrom(stats,residuals)
importFrom(stats,rnbinom)
importFrom(stats,rpois)
importFrom(stats,runmed)
importFrom(stats,smooth.spline)
importFrom(stats,spline)
importFrom(stats,splinefun)
importFrom(stats,var)
importFrom(utils,combn)
importFrom(utils,head)
importFrom(utils,tail)
useDynLib(scran)
