plot_mapping {scPipe} | R Documentation

## Plot mapping statistics for `SingleCellExperiment` object.

### Description

Plot mapping statistics for `SingleCellExperiment` object.

### Usage

    plot_mapping(sce, sel_col = NULL, percentage = FALSE, dataname = "")

### Arguments

`sce` | a `SingleCellExperiment` object
`sel_col` | a vector of column names, indicating the columns to use for plot. by default it will be the mapping result.
`percentage` | TRUE to convert the number of reads to percentage
`dataname` | the name of this dataset, used as plot title

### Value

a ggplot2 object

### Examples

    data("sc_sample_data")
    data("sc_sample_qc")
    sce = SingleCellExperiment(assays = list(counts = as.matrix(sc_sample_data)))
    organism(sce) = "mmusculus_gene_ensembl"
    gene_id_type(sce) = "ensembl_gene_id"
    QC_metrics(sce) = sc_sample_qc
    demultiplex_info(sce) = cell_barcode_matching
    UMI_dup_info(sce) = UMI_duplication

    plot_mapping(sce,percentage=TRUE,dataname="sc_sample")

[Package scPipe version 1.8.0 Index]